Owner

haesleinhuepf

51 indexed repositories · View on GitHub

• stackview

  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets

  Python · 184 stars

• BioImageAnalysisNotebooks

  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more

  Cool · 157 stars

• bia-bob

  BIA Bob is a Jupyter+LLM-based assistant for interacting with image data and for working on Bio-image Analysis tasks.

  Python · 137 stars

• git-bob

  git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.

  Python · 71 stars

• blablado

  blablado is an extensible Assistant that listens to your voice and can execute custom Python functions you provided. It can speak as well.

  Python · 69 stars

• apoc

  Accelerated Pixel and Object Classifiers (APOC)

  Python · 61 stars

• napari-skimage-regionprops

  Feature extraction for labeled objects in images using regionprops from scikit-image

  Python · 57 stars

• devbio-napari

  Python · 52 stars

• napari-accelerated-pixel-and-object-classification

  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

  Python · 47 stars

• imagejmacromarkdown

  Generate markdown notebooks from ImageJ Macro

  Java · 33 stars

• napari-assistant

  Jupyter Notebook · 33 stars

• napari-segment-blobs-and-things-with-membranes

  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o...

  Python · 31 stars

• human-eval-bia

  Benchmarking Large Language Models for Bio-Image Analysis Code Generation

  Jupyter Notebook · 26 stars

• awesome-napari-plugins-that-are-not-on-the-napari-hub-yet

  Jupyter Notebook · 25 stars

• napari-process-points-and-surfaces

  Process and analyze surfaces using vedo in napari.

  Python · 25 stars

• story-writer

  An AI-based story writer and Python library which uses OpenAI's chatGPT and Dall-E to generate PDFs with a story and a picture from a pro...

  Python · 24 stars

• napari-simpleitk-image-processing

  Process images using SimpleITK in napari

  Python · 23 stars

• translate-pptx

  translate-pptx is a command line tool that translates PowerPoint PPTX files from one language to another.

  Python · 21 stars

• napari-plot-profile

  Python · 20 stars

• the-segmentation-game

  Gamified image segmentation quality estimation

  Python · 20 stars

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