greenelab/annotation-refinery

A python package that consists of functions that process publicly available annotated sets of genes

Stars: 5
Forks: 2
Open beginner issues: 0
Indexed issues: 6

Dominant language: Python
License: No license data
Last GitHub push: Dec 18, 2017
Latest indexed: Sep 17, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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6 open issues indexed

Abstract code in download_files.py file to be able to interact with each service (GO, DO, KEGG) independently. Open

greenelab/annotation-refinery#1 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Abstract code that builds file paths from urls into a function, using os.path. and urlsplit Open

greenelab/annotation-refinery#2 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Annotation refinery creating more versions in Tribe when it looks like list of genes in the geneset is unchanged. Open

greenelab/annotation-refinery#5 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Annotation refinery is taking too long to load all of the GO, KEGG and DO sets to Tribe. Open

greenelab/annotation-refinery#6 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
Move common urls among species "*.ini" files to "main_config.ini" file so that we only have to change it in one place if we need to. Open

greenelab/annotation-refinery#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026
"download_files" not exist Open

greenelab/annotation-refinery#11 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 17, 2026

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