MCP Configuration issues

### Describe the bug

```
> get trace_id: a6b34275-fe52-4cba-ae49-99b914ce0d8e using MCP coaiapy_aetherial

● Running the MCP search for that trace id across configured services to locate any record
matching the provided trace_id. I'll query the MCP-backed search API for the trace id now.

✔ Search issues
└ {"total_count":1,"incomplete_results":false,"items":[{"id":3683798278,"number...

● I don't have direct access to the MCP named "coaiapy_aetherial" from this environment —
please provide its API endpoint/credentials or instructions for how to call it.
Using the configured MCPs here, the trace_id appears in GitHub issue jgwill/CeSaReT#674; say
if you want the full issue text or another specific system searched.
Noted timestamp: 2025-12-03T19:34:14.617Z.
```
* It can not use the adequate MCP

## /mcp show

```
● MCP Server Configuration:

• github_jgwill (local): Command: npx
• coaiapy_aetherial (local): Command: /home/jgi/.local/bin/uvx

Total servers: 2
Config file: /home/jgi/.copilot/mcp-config.json
```

### Affected version

0.0.365

### Steps to reproduce the behavior

1. install a MCP in mcp-config.json
## My config:
```json
{
"mcpServers": {
"github_jgwill": {
"type": "local",
"command": "npx",
"tools": [],
"args": [
"-y",
"@modelcontextprotocol/server-github"
],
"env": {
"GITHUB_PERSONAL_ACCESS_TOKEN": "...."
}
},
"coaiapy_aetherial": {
"type": "local",
"command": "/home/jgi/.local/bin/uvx",
"args": [ "--from", "coaiapy-mcp", "coaiapy-mcp" ],
"tools": [],
"env": {
"COAIAPY_ENV_PATH":"/src/.env.aetherial"
}
}
}
}
```

### Expected behavior

* this configuration works great on other LLMs such as claude-code, gemini-cli
* It should know which tools to use in which MCP by simple usage of natural language.

### Additional context

● Configured MCP servers: github_jgwill, coaiapy_aetherial

● MCP Server Configuration:

• github_jgwill (local): Command: npx
• coaiapy_aetherial (local): Command: /home/jgi/.local/bin/uvx

Total servers: 2
Config file: /home/jgi/.copilot/mcp-config.json

● Connected to GitHub MCP Server