gagneurlab/FRASER

View on GitHub

FRASER - Find RAre Splicing Events in RNA-seq

Stars: 57
Forks: 25
Open beginner issues: 0
Indexed issues: 25

Dominant language: R
License: No license data
Last GitHub push: Feb 10, 2026
Latest indexed: Sep 16, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Open All

25 open issues indexed

Safety checks for sub function of countRNADaata Open

gagneurlab/FRASER#3 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Understanding the concept behind the metrics used for FRASER calculations Open

gagneurlab/FRASER#9 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
FRASER maxing out memory on sge cluster Open

gagneurlab/FRASER#29 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Remove group and condition from the code/vignette as it is not used within FRASER Open

gagneurlab/FRASER#31 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
filter out reads with MAPQ=0 & duplicated reads Open

gagneurlab/FRASER#32 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
annotateRangesWithTxDb function error Open

gagneurlab/FRASER#38 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
"Please provide hgnc symbols to compute gene p values!" error Open

gagneurlab/FRASER#39 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Error in H5Fcreate(file) : HDF5. File accessibilty. Unable to open file. Open

gagneurlab/FRASER#40 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Getting error when counting splice sites Open

gagneurlab/FRASER#79 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
ERROR: Paired-end reads were detected in single-end read library Open

gagneurlab/FRASER#45 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
A question about resultsByGenes Open

gagneurlab/FRASER#46 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
FRASER Error in check_returned_array Open

gagneurlab/FRASER#48 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
FRASER Resources and Run Time Open

gagneurlab/FRASER#49 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
FRASER with non model organisms Open

gagneurlab/FRASER#51 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Error in predictYCpp(as.matrix(H), D, b) : Mat::init(): requested size is too large; suggest to enable ARMA_64BIT_WORD Open

gagneurlab/FRASER#55 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Merging Multiple Samples Open

gagneurlab/FRASER#56 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Incompatibility of fds objects between versions Open

gagneurlab/FRASER#59 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Fix README after moving to gagneurlab Open

gagneurlab/FRASER#73 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Multi-mapping reads filtering support in countNonSplicedReads Open

gagneurlab/FRASER#91 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
FRASER merging FraserDataSet for multiple individual samples Open

gagneurlab/FRASER#94 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
FRASER can not identify known abnormal splicing event Open

gagneurlab/FRASER#97 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Can FRASER take junction read count as input? Open

gagneurlab/FRASER#98 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
optimHyperParams run error Open

gagneurlab/FRASER#99 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
How to prepare sampleTable.tsv ? Open

gagneurlab/FRASER#101 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Data Interpretation I type of aberrant splicing Open

gagneurlab/FRASER#120 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026

gagneurlab/FRASER

Get new issues in your inbox