ga4gh / ga4gh/phenopacket-schema

Consider (breaking change) simplification or update of VRS.

Open
#445 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Java
Stars
101
Forks
34
PR merge metrics
No merged PRs in 30d

Description

- Low use of VRS among current users of Phenopackets (none are aware of)
- Preference for VCF-like and HGVS-like syntax.
- We are now using an outdated version of VRS to support a stable standard. Could we consider replacing this with a simpler version of the parts of VERSATILE we are using, along with a field to link to modern versions of VRS for those who need it?

Contributor guide

Open the contributing guide

Research direction

Start by reviewing how VRS is currently used in the Phenopacket schema and compare those parts with the requested VERSATILE simplification. Clarify the proposed replacement fields, compatibility impact, and how links to modern VRS versions should work; done requires an agreed design before implementation.

Written by the indexing model from the issue text.

Assessment

Domain
backend-api-design
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.