ga4gh / ga4gh/phenopacket-schema
OntologyClass for ICD-O?
- Dominant language
- Java
- Stars
- 101
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
The `Disease` object references `OntologyClass` for [ICD-O values](https://github.com/phenopackets/phenopacket-schema/blob/d3c75d358d99c8d479a2d433a9ea39cf71ad592d/src/main/proto/phenopackets/schema/v2/core/disease.proto#L47) used for `primary_site` annotations.
Which ICD-O ontology implementation does this refer to? While the codes themselves are well defined/known, It is no clear which (public) source for CURIEs would be recommended (in fact, exists).
Contributor guide
Research direction
Start with src/main/proto/phenopackets/schema/v2/core/disease.proto at the linked primary_site annotation and trace how OntologyClass is used for ICD-O values. Determine which public CURIE source or ontology implementation the schema should recommend, then document or clarify that reference in the issue’s requested scope.
Written by the indexing model from the issue text.
Assessment
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100