Owner
fulcrumgenomics
32 indexed repositories · View on GitHub
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fgbio
Tools for working with genomic and high throughput sequencing data.
Scala · 372 stars
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fqgrep
Grep for FASTQ files
Rust · 104 stars
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fqtk
Fast FASTQ sample demultiplexing in Rust.
Rust · 71 stars
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riker
Spiritual successor to picard for sequencing qc
Rust · 62 stars
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fgumi
High-performance UMI tools for NGS data analysis
Rust · 55 stars
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guide-counter
A better, faster way to count guides in CRISPR screens.
Rust · 35 stars
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fgpyo
Quality of life improvements for Bioinformatics in Python.
Python · 35 stars
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ref-solver
Identify which human reference genome was used to align a BAM/SAM/CRAM file
Rust · 33 stars
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ferro-hgvs
A high-performance HGVS variant nomenclature parser and normalizer written in Rust
Rust · 28 stars
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dupblaster
Blazingly fast, streaming duplicate detection for NGS data
Rust · 21 stars
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fgsv
Tools to gather evidence for structural variation via breakpoint detection.
Scala · 20 stars
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chelae
Fast, highly accurate, read-trimming for NGS data.
Rust · 17 stars
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pybedlite
Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)
Python · 16 stars
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prymer
Python Primer Design Library
Python · 15 stars
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sopt
An argument parsing library for Scala
Scala · 12 stars
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pybwa
Python language bindings for bwa
Python · 12 stars
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stitch
Toolkit for analyzing chimeric reads and structural variants in sequencing data
Rust · 11 stars
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pyfgaws
Python tools and APIs for working with AWS
Python · 9 stars
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bgzf
BGZF compression library in Rust
Rust · 9 stars
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TypeScript · 6 stars
- 12 more repositories live on View on GitHub
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enhancement
fulcrumgenomics/fg-idprimer#6 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/fg-idprimer#13 · 1 comment · 0 reactions · 0 assignees ·
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fulcrumgenomics/fgsmk#7 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/fgsmk#8 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/fgsmk#11 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/fgsmk#13 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/fgsmk#16 · 0 comments · 1 reaction · 0 assignees ·
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enhancement
fulcrumgenomics/rd4#3 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
fulcrumgenomics/rd4#4 · 0 comments · 0 reactions · 0 assignees ·
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Check whether or not the vector of depth counts returned by the local_d4_reader need to be sorted. Openenhancement
fulcrumgenomics/rd4#5 · 1 comment · 0 reactions · 0 assignees ·
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bug
fulcrumgenomics/rd4#6 · 0 comments · 0 reactions · 0 assignees ·
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bug
fulcrumgenomics/rd4#7 · 0 comments · 0 reactions · 0 assignees ·
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question
fulcrumgenomics/bwa-aln-interactive#1 · 0 comments · 0 reactions · 0 assignees ·
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good first issue help wanted
fulcrumgenomics/bwa-aln-interactive#2 · 1 comment · 0 reactions · 0 assignees ·
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good first issue question
fulcrumgenomics/bwa-aln-interactive#3 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/bwa-aln-interactive#5 · 0 comments · 0 reactions · 0 assignees ·
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documentation good first issue help wanted
fulcrumgenomics/prymer#6 · 1 comment · 0 reactions · 0 assignees ·
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question
fulcrumgenomics/prymer#7 · 0 comments · 0 reactions · 0 assignees ·
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good first issue help wanted question
fulcrumgenomics/prymer#8 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/prymer#10 · 2 comments · 1 reaction · 0 assignees ·
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priority: higher/high
fulcrumgenomics/prymer#11 · 0 comments · 0 reactions · 1 assignee ·
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priority: higher/high
fulcrumgenomics/prymer#12 · 0 comments · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#13 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/prymer#14 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/prymer#15 · 2 comments · 0 reactions · 1 assignee ·
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Consider returning `pybedlite.overlap_detector.Interval` instead of `BedLikeCoords` from `Span` Open
fulcrumgenomics/prymer#40 · 0 comments · 0 reactions · 0 assignees ·
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priority: medium
fulcrumgenomics/prymer#41 · 1 comment · 0 reactions · 0 assignees ·
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fulcrumgenomics/prymer#42 · 0 comments · 0 reactions · 0 assignees ·
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priority: medium
fulcrumgenomics/prymer#53 · 3 comments · 0 reactions · 1 assignee ·
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priority: low
fulcrumgenomics/prymer#54 · 0 comments · 0 reactions · 0 assignees ·
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priority: higher/high
fulcrumgenomics/prymer#55 · 0 comments · 0 reactions · 1 assignee ·
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priority: medium
fulcrumgenomics/prymer#56 · 0 comments · 0 reactions · 0 assignees ·
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discussion
fulcrumgenomics/prymer#57 · 1 comment · 0 reactions · 0 assignees ·
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priority: higher/high
fulcrumgenomics/prymer#58 · 1 comment · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#63 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/prymer#66 · 0 comments · 0 reactions · 0 assignees ·
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fulcrumgenomics/prymer#67 · 0 comments · 0 reactions · 0 assignees ·
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Local mkdocs issues Open
fulcrumgenomics/prymer#72 · 1 comment · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#76 · 1 comment · 0 reactions · 0 assignees ·
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fulcrumgenomics/prymer#77 · 1 comment · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#78 · 0 comments · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#80 · 0 comments · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#81 · 1 comment · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#82 · 1 comment · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#83 · 0 comments · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#85 · 0 comments · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#88 · 0 comments · 0 reactions · 1 assignee ·
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fulcrumgenomics/prymer#92 · 1 comment · 0 reactions · 0 assignees ·
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Primer 4.0 TODO List Open
fulcrumgenomics/prymer#108 · 0 comments · 0 reactions · 2 assignees ·
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fulcrumgenomics/prymer#122 · 0 comments · 0 reactions · 0 assignees ·
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