Owner
fmi-faim
27 indexed repositories · View on GitHub
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faim-ipa
A collection of Image Processing and Analysis (IPA) functions used at the Facility for Advanced Imaging and Microscopy (FAIM)
Python · 20 stars
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napari-psf-analysis
A napari plugin to analysis point spread functions.
Python · 11 stars
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fmi-ij2-plugins
A collection of ImageJ2 plugins for use with KNIME
Java · 8 stars
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ipa-project-template
Copier template for image processing & analysis projects.
Jinja · 7 stars
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faim-huygens
Tools to interact with SVI Huygens from Python
Python · 3 stars
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napari-save-transformed
Save image layers with their transformation applied
Python · 3 stars
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faim-wako-searchfirst
Python scripts for the SearchFirst option in Wako Software Suite
Python · 2 stars
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visiview-scripts
A collection of macros for the VisiView acquisition software
Python · 1 star
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fmi-knime-update-site
KNIME Extensions for Image Processing at the FMI Basel
Shell · 1 star
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prefect-workflows
A collection of Prefect workflows.
Python · 1 star
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pixi-assistant
Helper CLI to check local system settings to work with pixi projects
Rust · 1 star
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cellvoyager-types
Pydantic models for CellVoyager CV7000/CV8000 metadata
Python · 1 star
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prefect-workflows-gpl
A collection of Prefect workflows - licensed with GPL because of their dependencies.
Python · 0 stars
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faim-imagej-prefect
A SciJava plugin to interact with Prefect Cloud, developed at the FMI Basel.
Java · 0 stars
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0 stars
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prefect-faim-huygens
Prefect workflows for SVI Huygens Core
Python · 0 stars
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Python · 0 stars
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prefect-n2v
Noise2Void Prefect workflows.
Python · 0 stars
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n2v-tasks
A collection of tasks to use Noise2Void.
Python · 0 stars
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Python · 0 stars
- 7 more repositories live on View on GitHub
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fmi-faim/prefect-workflows-gpl#2 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/prefect-workflows-gpl#3 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
fmi-faim/visiview-scripts#5 · 1 comment · 0 reactions · 1 assignee ·
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enhancement
fmi-faim/visiview-scripts#6 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/visiview-scripts#9 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/visiview-scripts#12 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/visiview-scripts#13 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/visiview-scripts#14 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/visiview-scripts#16 · 0 comments · 0 reactions · 0 assignees ·
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Add tests Open
fmi-faim/faim-imagej-prefect#2 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/faim-imagej-prefect#4 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
fmi-faim/faim-imagej-prefect#8 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
fmi-faim/faim-imagej-prefect#9 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
fmi-faim/faim-imagej-prefect#10 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/faim-imagej-prefect#11 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/faim-dl#1 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/faim-huygens#6 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/faim-huygens#7 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/prefect-faim-huygens#1 · 0 comments · 0 reactions · 1 assignee ·
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Missing dependencies Open
fmi-faim/faim-3d-organoid-seg#1 · 2 comments · 0 reactions · 0 assignees ·
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bug enhancement
fmi-faim/prefect-n2v#3 · 0 comments · 0 reactions · 0 assignees ·
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enhancement good first issue
fmi-faim/n2v-tasks#1 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/prefect-faim-hcs#3 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/faim-fiji#1 · 0 comments · 0 reactions · 1 assignee ·
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fmi-faim/fmi-ij2-plugins#6 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/fmi-ij2-plugins#16 · 2 comments · 0 reactions · 0 assignees ·
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fmi-faim/fmi-ij2-plugins#17 · 2 comments · 0 reactions · 0 assignees ·
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fmi-faim/fmi-knime-update-site#7 · 1 comment · 0 reactions · 1 assignee ·
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fmi-faim/fmi-knime-update-site#8 · 0 comments · 0 reactions · 0 assignees ·
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documentation enhancement
fmi-faim/prefect-workflows#3 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/prefect-workflows#5 · 1 comment · 0 reactions · 0 assignees ·
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fmi-faim/prefect-workflows#10 · 0 comments · 0 reactions · 0 assignees ·
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bug enhancement
fmi-faim/prefect-workflows#17 · 0 comments · 1 reaction · 0 assignees ·
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fmi-faim/prefect-workflows#18 · 2 comments · 0 reactions · 0 assignees ·
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fmi-faim/prefect-workflows#19 · 0 comments · 0 reactions · 0 assignees ·
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Add color by feature Open
fmi-faim/napari-explore-points#1 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/napari-explore-points#2 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/pixi-assistant#1 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/fmi-trackmate-addons#7 · 0 comments · 0 reactions · 0 assignees ·
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documentation good first issue
fmi-faim/napari-psf-analysis#7 · 3 comments · 0 reactions · 1 assignee ·
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enhancement
fmi-faim/napari-psf-analysis#14 · 1 comment · 0 reactions · 0 assignees ·
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bug
fmi-faim/napari-psf-analysis#25 · 1 comment · 0 reactions · 0 assignees ·
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enhancement
fmi-faim/napari-psf-analysis#52 · 0 comments · 0 reactions · 0 assignees ·
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Add SNR criterion Openenhancement
fmi-faim/napari-psf-analysis#53 · 0 comments · 0 reactions · 0 assignees ·
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bug
fmi-faim/napari-psf-analysis#60 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/napari-psf-analysis#61 · 4 comments · 0 reactions · 0 assignees ·
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fmi-faim/napari-psf-analysis#62 · 2 comments · 0 reactions · 0 assignees ·
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fmi-faim/napari-psf-analysis#63 · 0 comments · 0 reactions · 0 assignees ·
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fmi-faim/napari-psf-analysis#64 · 2 comments · 0 reactions · 0 assignees ·
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fmi-faim/napari-psf-analysis#65 · 0 comments · 0 reactions · 0 assignees ·
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