Owner

flavell-lab

10 indexed repositories · View on GitHub

CePNEM-web
Website displaying CePNEM data.

HTML · 2 stars
CePNEMAnalysis.jl

Jupyter Notebook · 2 stars
WormFeatureDetector.jl
A collection of heuristics for locating various features of the worm.

Julia · 0 stars
BehaviorDataNIR.jl
NIR behavior data processing

Julia · 0 stars
ImageDataIO.jl

Julia · 0 stars
SLURMManager.jl

Julia · 0 stars
RegistrationGraph.jl
A collection of tools for running elastix registration.

Julia · 0 stars
ExtractRegisteredData.jl

Julia · 0 stars
SegmentationTools.jl

Julia · 0 stars
flv-c-setup
flv-c server setup script

Shell · 0 stars

Open All

Worm head detection algorithm inconsistency Open

flavell-lab/WormFeatureDetector.jl#2 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Add neurons to the plot upon clicking on them in the encoding table Open

enhancement

flavell-lab/CePNEM-web#5 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Add explanations on hover for table columns, etc Open

enhancement good first issue

flavell-lab/CePNEM-web#14 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Checking for time points with sufficient enough deepnet confidence Open

flavell-lab/BehaviorDataNIR.jl#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
unsafe h5open Open

flavell-lab/BehaviorDataNIR.jl#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Perforamnce improvement needed for compute_worm_spline! Open

flavell-lab/BehaviorDataNIR.jl#11 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Remove Documenter.jl dependency Open

flavell-lab/ImageDataIO.jl#9 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
analysis functions don't work with 800 timepoints dataset Open

bug

flavell-lab/CePNEMAnalysis.jl#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
get_pumping_ranges to support datasets with different lengths of time segments Open

flavell-lab/CePNEMAnalysis.jl#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
automatically restart if squeue fails Open

flavell-lab/SLURMManager.jl#3 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 16, 2026
Immobilized worm registration Open

bug

flavell-lab/RegistrationGraph.jl#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
run_elastix_openmind to sbatch script Open

enhancement

flavell-lab/RegistrationGraph.jl#8 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
`fix_param_paths` looks for invalid paths Open

flavell-lab/RegistrationGraph.jl#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
extract_roi_overlap speed issue Open

enhancement

flavell-lab/ExtractRegisteredData.jl#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
hclust_minimum_threshold is missing/not-defined Open

bug

flavell-lab/ExtractRegisteredData.jl#5 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
slow instance_segmentation_threshold Open

enhancement question

flavell-lab/SegmentationTools.jl#3 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 16, 2026
an assignment within a for loop is never used or updated within the loop Open

flavell-lab/SegmentationTools.jl#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026
Script fails to install pytorch-3dunet if not run from user's home/src directory Open

flavell-lab/flv-c-setup#2 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 16, 2026

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