epiverse-trace/serofoi

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Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

Stars: 22
Forks: 3
Open beginner issues: 0
Indexed issues: 20

Dominant language: R
License: No license data
Last GitHub push: Mar 28, 2025
Latest indexed: Sep 15, 2026
Contributing guide: Contributing guide
Code of conduct: Code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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20 open issues indexed

Model initialisation Open

enhancement modelling

epiverse-trace/serofoi#63 · 2 comments · 1 reaction · 1 assignee · Indexed Sep 15, 2026
Binned age groups Open

enhancement serodata

epiverse-trace/serofoi#71 · 6 comments · 0 reactions · 2 assignees · Indexed Sep 15, 2026
Allow users to perform optimisation (rather than sampling) Open

enhancement modelling

epiverse-trace/serofoi#73 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Creating functionality for time and age varying model. Open

epiverse-trace/serofoi#167 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Change minimum required version of rstan Open

epiverse-trace/serofoi#179 · 8 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Restructuring inference methods Open

epiverse-trace/serofoi#190 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Set default behaviour for sampling initialization Open

epiverse-trace/serofoi#201 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Improve Documentation: Use `get_foi_index()` Instead of Manual `rep(...)` for `foi_index` in `fit_seromodel` Examples Open

epiverse-trace/serofoi#204 · 1 comment · 1 reaction · 1 assignee · Indexed Sep 15, 2026
Add an article about fitting models with seroreversion Open

epiverse-trace/serofoi#205 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Adding VPH use case to Use Cases article Open

epiverse-trace/serofoi#212 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Unit testing for stan functions Open

epiverse-trace/serofoi#214 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Unifying stan files for models with and without seroreversion Open

epiverse-trace/serofoi#219 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 15, 2026
Improve error messages for `plot_foi_estimates` and `plot_rhats` Open

epiverse-trace/serofoi#222 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add option to visualise the prior distribution Open

discussion

epiverse-trace/serofoi#238 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Revisar Documentacion archivo 'build_stan_data.R' Open

epiverse-trace/serofoi#283 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Stan warning about Pareto k diagnosis should be handled by tryCatch() Open

epiverse-trace/serofoi#294 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
versions Open

epiverse-trace/serofoi#300 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Structure for incorporating covariates into a `fit_seromodel_covariates` function Open

epiverse-trace/serofoi#306 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add argument to set `ymax` in seroprevalence plot to improve comparison. Open

epiverse-trace/serofoi#307 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Consider grouping related arguments into modules Open

epiverse-trace/serofoi#309 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

epiverse-trace/serofoi

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