epam/NGB

View on GitHub

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

Stars: 171
Forks: 43
Open beginner issues: 0
Indexed issues: 228

Dominant language: Java
License: MIT
Last GitHub push: Jul 29, 2025
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Open All

228 open issues indexed

Feature requests Open

epam/NGB#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
NGB dies while loading gff list via cli Open

kind/bug

epam/NGB#7 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
NGB shall register files using relative paths Open

kind/enhancement

epam/NGB#15 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
how to run NGB Open

epam/NGB#23 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Loading bam files from AWS s3 into NGB Open

epam/NGB#31 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 15, 2026
Using NGB via https Open

epam/NGB#35 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Implement image exporting into vector format (SVG/pdf) Open

kind/enhancement

epam/NGB#36 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Unable to register VCF if GATK index is present Open

kind/bug

epam/NGB#37 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
QUAL field not available in the variant filters Open

kind/enhancement

epam/NGB#40 · 4 comments · 0 reactions · 2 assignees · Indexed Sep 15, 2026
Pasing data from FORMAT column of VCF file Open

epam/NGB#44 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Customizable fields list in VCF info table Open

epam/NGB#60 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Unite local ruler and reference Open

epam/NGB#64 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Integration with different databases (UniProt, KEGG, etc) and unified access to them Open

epam/NGB#66 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Visual improvements - tracks and headers Open

epam/NGB#69 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
EXac_AF displaying bug in variation table Open

kind/bug

epam/NGB#71 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add custom presets for filtering variation table by genes Open

epam/NGB#73 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Variants has no gene name Open

epam/NGB#74 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
CLI tests fail on Windows Open

epam/NGB#87 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Unchecked index for open by URL Open

epam/NGB#92 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Show exon number Open

kind/duplicate kind/enhancement

epam/NGB#94 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Show vcf file name within a variation table Open

epam/NGB#98 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Introduce ROI navigation Open

epam/NGB#99 · 0 comments · 0 reactions · 3 assignees · Indexed Sep 15, 2026
Text strings overlap Open

kind/bug

epam/NGB#100 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
.seg file "jumps" when dragging the track Open

epam/NGB#102 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Seg data invisible after session sharing Open

epam/NGB#103 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Wrong text display in variants tab Open

kind/bug

epam/NGB#104 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Include visual settings in shared link Open

epam/NGB#110 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Annotations commenting Open

epam/NGB#112 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Make the drag/scroll bar more prominent Open

kind/enhancement

epam/NGB#120 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
The zoom in/out/screen shot button get in the way of the X to close out a pane Open

epam/NGB#121 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Make .deb and/or .rpm packages Open

kind/enhancement

epam/NGB#135 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
show exon number Open

kind/duplicate kind/enhancement

epam/NGB#139 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Optimize S3 browsing performance Open

epam/NGB#142 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add "Group" by "Read Group" Open

kind/enhancement

epam/NGB#155 · 3 comments · 0 reactions · 3 assignees · Indexed Sep 15, 2026
Variants table doesn't contain variation type and gene Open

epam/NGB#164 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Incorrect display of the .vcf opened from the gui Open

epam/NGB#165 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Rename the file in current session Open

kind/enhancement

epam/NGB#166 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
BLAT search panel shows "in progress" even if server errored Open

kind/bug

epam/NGB#169 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Consider the adding of the read groups selector Open

epam/NGB#174 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Bam/CRAM file consistency validation before registering Open

epam/NGB#175 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
SAM format support Open

epam/NGB#176 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Error "2" registering VCF Files Open

kind/bug

epam/NGB#177 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Enlarge the track for removed reads Open

kind/enhancement

epam/NGB#178 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Display VCF as bars instead of bubbles Open

epam/NGB#179 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
BLAT search feature shall allow to manually input a sequence Open

kind/enhancement

epam/NGB#180 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Docker 2.6.0.730.1-dev image not starting up properly Open

epam/NGB#181 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
BLAT returns unexisting coordinates Open

epam/NGB#183 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Error is displayed if I try to open DEL variation info Open

kind/bug

epam/NGB#185 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Slow navigation within file browser (Open file from NGB server). Open

epam/NGB#186 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
BigWig files are not visible in the file browser (Open file from NGB server). Open

epam/NGB#187 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

epam/NGB

Get new issues in your inbox