ebi-ait/hca-ebi-dev-team

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Repository for hca ebi dev team agile management. See zenhub board

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Forks: 0
Open beginner issues: 0
Indexed issues: 154

Dominant language: Jupyter Notebook
License: No license data
Last GitHub push: Mar 10, 2026
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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154 open issues indexed

[Archiver] Review Integration Tests Open

blocked

ebi-ait/hca-ebi-dev-team#19 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Investigate changing ingest to host spreadsheets in S3 vs adding the volume to backup Open

medium

ebi-ait/hca-ebi-dev-team#38 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[File-Archiver] Add State Tracking Open

ebi-ait/hca-ebi-dev-team#44 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Validation] Catch duplicate id fields for entities in validation Open

ebi-ait/hca-ebi-dev-team#47 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add validation that there should be no uuid columns for new submissions Open

ebi-ait/hca-ebi-dev-team#50 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Update submissions aren't appearing in My Submissions in the UI Open

ebi-ait/hca-ebi-dev-team#52 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Manage AWS resources Open

Epic

ebi-ait/hca-ebi-dev-team#66 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Design addition and updates to archived data Open

blocked large

ebi-ait/hca-ebi-dev-team#70 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
[File-Archiver] DSP Globus Implementation Open

blocked large

ebi-ait/hca-ebi-dev-team#71 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Hinxton CLI tool Open

Epic

ebi-ait/hca-ebi-dev-team#78 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 15, 2026
[Archiver/File-Archiver] BAM convert all fastq files for consistency. Open

needs analysis

ebi-ait/hca-ebi-dev-team#81 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Core] Notify Dev-Ops when submission is in Archiving Open

ebi-ait/hca-ebi-dev-team#83 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Sync files from multiple source buckets using HCA (DCP) CLI Open

medium

ebi-ait/hca-ebi-dev-team#88 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Archiving-Conversion] Conversion Issues that Require Design Open

needs point estimate

ebi-ait/hca-ebi-dev-team#95 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Core] Accept Archiving Results Open

ebi-ait/hca-ebi-dev-team#96 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[UI] Show Results of Archiving Open

ebi-ait/hca-ebi-dev-team#98 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Archiver] Update DSP entities if a DSP entity link exists in Core Open

ebi-ait/hca-ebi-dev-team#99 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[UploadService] Update key-pair of checksum compute env Open

ebi-ait/hca-ebi-dev-team#101 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Archiver] Ontology validation fails in DSP Open

ebi-ait/hca-ebi-dev-team#102 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Incorporate standalone graph validator into ingest system Open

Epic

ebi-ait/hca-ebi-dev-team#103 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Investigation] Does file-archiver work on Amazon Compute? Open

ebi-ait/hca-ebi-dev-team#104 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Archiving as a Service Open

Epic

ebi-ait/hca-ebi-dev-team#105 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Notify wranglers when a project's status changes Open

ebi-ait/hca-ebi-dev-team#113 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
[UI] Use Dynamic Metadata schema Open

ebi-ait/hca-ebi-dev-team#117 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Tag lambda AWS resources with hca tags Open

ebi-ait/hca-ebi-dev-team#122 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[UI] Data Consent Open

ebi-ait/hca-ebi-dev-team#128 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Core] Features for Data Consent Open

ebi-ait/hca-ebi-dev-team#130 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
DCP 2 MVP Ingest to Terra flow Open

Epic

ebi-ait/hca-ebi-dev-team#133 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Metadata documentation website onto schema.humancellatlas.org Open

Epic

ebi-ait/hca-ebi-dev-team#135 · 9 comments · 0 reactions · 2 assignees · Indexed Sep 15, 2026
Project Data Migration Open

small

ebi-ait/hca-ebi-dev-team#137 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Automation of deployment SOP Open

ebi-ait/hca-ebi-dev-team#142 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Metadata validation should fail if ontology service is down Open

ebi-ait/hca-ebi-dev-team#143 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Project tab/worksheet should be skipped in spreadsheet template generation Open

ebi-ait/hca-ebi-dev-team#145 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Update the version of the pypi package for the graph validator tool. Open

ebi-ait/hca-ebi-dev-team#150 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[UI] User should be able to see linking progress and failure Open

ebi-ait/hca-ebi-dev-team#158 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Create script to trigger file archiver jobs in parallel Open

ebi-ait/hca-ebi-dev-team#159 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Ability for the user to modify and override the archive entity converted data Open

ebi-ait/hca-ebi-dev-team#161 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
As a wrangler I want to be able to use a single CLI for all the data file transfers for getting data into ingest. Open

Epic Product development

ebi-ait/hca-ebi-dev-team#162 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
As a wrangler I want to be able to update DCP1 projects so that they are correct in DCP2 Open

Epic Product development

ebi-ait/hca-ebi-dev-team#163 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Remove unused secret exporter_auth_info in the exporter Open

ebi-ait/hca-ebi-dev-team#167 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
As a user I want to be able to run the file archiver in parallel automatically, so that the conversions happens quicker. Open

Epic

ebi-ait/hca-ebi-dev-team#169 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[File Archiver] Error: RangeError: The value "6392147239" is invalid for option "size" Open

ebi-ait/hca-ebi-dev-team#174 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[File Archiver] TypeError [ERR_INVALID_URL]: Invalid URL: undefined Open

ebi-ait/hca-ebi-dev-team#175 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Archiver] Source supported instrument model list from DSP. Open

ebi-ait/hca-ebi-dev-team#177 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Improve json error messages Open

Epic Product development

ebi-ait/hca-ebi-dev-team#180 · 2 comments · 0 reactions · 4 assignees · Indexed Sep 15, 2026
[Archiver] Secure archiver service endpoints Open

ebi-ait/hca-ebi-dev-team#184 · 8 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
[Ingest UI] Design changes for All Projects view (Wrangler's Dashboard) Open

ebi-ait/hca-ebi-dev-team#185 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Archiver] Ability for the user to modify and override the archive entity converted data Open

ebi-ait/hca-ebi-dev-team#186 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Ingest UI] Common Headers & Footers Open

ebi-ait/hca-ebi-dev-team#187 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Ingest UI] Design Changes for My Projects (Wranglers) Open

ebi-ait/hca-ebi-dev-team#188 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026

ebi-ait/hca-ebi-dev-team

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