dandi/dandi-cli

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DANDI command line client to facilitate common operations

Stars: 28
Forks: 37
Open beginner issues: 0
Indexed issues: 178
Avg merge: 1d 17h
Merged PRs (30d): 9

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 14, 2026
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue

Open All

178 open issues indexed

dandi ls: known fields should allow for metadata schema Open

cmd-ls

dandi/dandi-cli#771 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
dandi cleanup (or gc) Open

dandi/dandi-cli#814 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
when downloading prompt users about how much data will be downloaded Open

cmd-download UX

dandi/dandi-cli#834 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Basic GUI, e.g. `dandi-gui` app Open

dandi/dandi-cli#835 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
`dandi organize` introduces validation errors Open

cmd-organize

dandi/dandi-cli#836 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Keywords are redundant between NWB files and the DANDIset Open

enhancement UX

dandi/dandi-cli#1263 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
more efficient caching Open

dandi/dandi-cli#848 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add search filters to relevant dandi commands Open

UX

dandi/dandi-cli#858 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Determine proper metadata for Zarr assets Open

cmd-upload zarr

dandi/dandi-cli#879 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add support for Zarr assets to `dandi organize` Open

cmd-organize zarr

dandi/dandi-cli#880 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add support for Zarr assets to `dandi ls` Open

cmd-ls zarr

dandi/dandi-cli#882 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
working with video files Open

dandi/dandi-cli#918 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
validate should stop skipping/ignoring files Open

cmd-validate

dandi/dandi-cli#921 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
people uploading with older versions of cli Open

dandi/dandi-cli#935 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
dandi ls with assets filter returns dandiset metadata Open

cmd-ls

dandi/dandi-cli#939 · 22 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Queue up assets "for later" if needing some wait time to become upload-able Open

UX

dandi/dandi-cli#942 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
necessary steps for syncing out-of-band upload of dandiset 108 Open

dandi/dandi-cli#956 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
RF move redirector testing into dandiapi testing? Open

blocked

dandi/dandi-cli#977 · 7 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Automate CLI docs in our sphinx docs to avoid manual and duplicate specification Open

documentation

dandi/dandi-cli#1002 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Harmonize commands flavor Open

UX

dandi/dandi-cli#1005 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
variableMeasured not being populated for icephys Open

dandi/dandi-cli#1016 · 17 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Do trigger /ingest even if not uploaded anything and if zarr-checksum is different from locally computed Open

cmd-upload zarr

dandi/dandi-cli#1049 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add new uri mappings for techniques Open

schema

dandi/dandi-cli#1067 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
investigate `--validation skip` and `--allow-any-path` decision tree Open

cmd-upload

dandi/dandi-cli#1074 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
reconfirm with user if really wanting to upload > 10k files Open

cmd-upload DX UX zarr

dandi/dandi-cli#1079 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
RF of "files" for explicit notion of DANDI vs BIDS dataset(s) layout Open

BIDS Python API

dandi/dandi-cli#1082 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Allow to extract basic metadata such as size + date modified from git/annex instead of a physical file Open

schema

dandi/dandi-cli#1089 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
dandi organize from remote drive Open

dandi/dandi-cli#1091 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
make find_dandi_files raise FileNotFoundError exception if path is invalid Open

dandi/dandi-cli#1094 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
organize: add support for beadl (experimental design +(optional) events) Open

dandi/dandi-cli#1117 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
error from dandi ls without -r option Open

cmd-ls

dandi/dandi-cli#1124 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
async dandiapi Open

dandi/dandi-cli#1127 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Loading bar for download? Open

dandi/dandi-cli#1159 · 18 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Add option to use (metadata of) assets already in the archive for the dandiset Open

dandi/dandi-cli#1169 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add testing of correct handling in case of metadata of dandiset.yaml and an asset are incorrect (according to dandischema) Open

dandi/dandi-cli#1177 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
extract basic metadata (digest? mime type?) for non-BIDS/NWB asset Open

dandi/dandi-cli#1192 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Provide "catchy" examples of use of dandi-cli in CLI within README.md Open

documentation

dandi/dandi-cli#1195 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
`dandiset.get_metadata` not working for some dandisets Open

dandi/dandi-cli#1205 · 9 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
request: dandiset.get_owners() Open

dandi/dandi-cli#1208 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
Dandi organize currently lacks an option to add custom keys to dandi file names Open

documentation

dandi/dandi-cli#1235 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
parse age reference Open

dandi/dandi-cli#1242 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Metadata / validation not caught before attempting to upload Open

dandi/dandi-cli#1270 · 48 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add support for validation of zarr filesets Open

blocked zarr

dandi/dandi-cli#1281 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Make RemoteAssetValidationError non-optional Open

dandi/dandi-cli#1304 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
[Feature] Support upload of Zarr-backend NWB files Open

zarr

dandi/dandi-cli#1310 · 7 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
question about naming when a spike sorting is included as a separate NWB file Open

dandi/dandi-cli#1314 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Parallel upload doesn't work on Windows (gets stuck) Open

os-windows

dandi/dandi-cli#1321 · 8 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
validation of bids zarr did not catch name mismatch in pair of json and ome.zarr Open

zarr

dandi/dandi-cli#1324 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 15, 2026
Audit & clean up warnings ignored in tests Open

code quality tests

dandi/dandi-cli#1360 · 2 comments · 1 reaction · 1 assignee · Indexed Sep 15, 2026
[question] expose programmatic access to dandiset metadata? Open

dandi/dandi-cli#1361 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026

dandi/dandi-cli

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