cytoscape / cytoscape/diffusion
Deleting columns throws an exception, Column still present in Results Panel
- Dominant language
- Java
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Description
Deleting one of the diffusion output columns in the node table causes the Table browser (and Output Panel) to act strangely.
java.lang.reflect.InvocationTargetException
at sun.reflect.GeneratedMethodAccessor46.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.cytoscape.event.internal.CyListenerAdapter.fireEvent(CyListenerAdapter.java:120)
at org.cytoscape.event.internal.CyEventHelperImpl.fireEvent(CyEventHelperImpl.java:79)
at org.cytoscape.session.internal.CySessionManagerImpl.setCurrentSession(CySessionManagerImpl.java:247)
at org.cytoscape.task.internal.session.OpenSessionTask$OpenSessionWithoutWarningTask.changeCurrentSession(OpenSessionTask.java:156)
at org.cytoscape.task.internal.session.OpenSessionTask$OpenSessionWithoutWarningTask.run(OpenSessionTask.java:143)
at org.cytoscape.work.internal.sync.DelegateTask.run(DelegateTask.java:72)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.innerRun(JDialogTaskManager.java:326)
at org.cytoscape.work.internal.task.JDialogTaskManager$TaskRunnable.run(JDialogTaskManager.java:355)
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
at java.util.concurrent.FutureTask.run(FutureTask.java:266)
at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.NullPointerException
at org.cytoscape.model.internal.CyTableImpl.getMatchingRows(CyTableImpl.java:575)
at org.cytoscape.diffusion.internal.util.DiffusionResult.getFirstMatchingRow(DiffusionResult.java:82)
at org.cytoscape.diffusion.internal.util.DiffusionResult.getRowForRank(DiffusionResult.java:76)
at org.cytoscape.diffusion.internal.util.DiffusionResult.rankToHeat(DiffusionResult.java:58)
at org.cytoscape.diffusion.internal.util.DiffusionResult.getMaxHeat(DiffusionResult.java:34)
at org.cytoscape.diffusion.internal.ui.HeatSelectionPanel.createSlider(HeatSelectionPanel.java:33)
at org.cytoscape.diffusion.internal.ui.AbstractSliderPanel.(AbstractSliderPanel.java:61)
at org.cytoscape.diffusion.internal.ui.HeatSelectionPanel.(HeatSelectionPanel.java:20)
at org.cytoscape.diffusion.internal.ui.OutputPanel.columnNameSelected(OutputPanel.java:220)
at org.cytoscape.diffusion.internal.ui.OutputPanel.access$200(OutputPanel.java:46)
at org.cytoscape.diffusion.internal.ui.OutputPanel$1.actionPerformed(OutputPanel.java:201)
at javax.swing.JComboBox.fireActionEvent(JComboBox.java:1258)
at javax.swing.JComboBox.contentsChanged(JComboBox.java:1332)
at javax.swing.AbstractListModel.fireContentsChanged(AbstractListModel.java:118)
at javax.swing.DefaultComboBoxModel.setSelectedItem(DefaultComboBoxModel.java:93)
at javax.swing.DefaultComboBoxModel.addElement(DefaultComboBoxModel.java:131)
at javax.swing.JComboBox.addItem(JComboBox.java:716)
at org.cytoscape.diffusion.internal.ui.OutputPanel.configureColumnNameComboBox(OutputPanel.java:191)
at org.cytoscape.diffusion.internal.ui.OutputPanel.handleEvent(OutputPanel.java:97)
... 16 more
Diffusion needs to better handle the output columns. Both rank and heat are handled as a pair, but should be handled independently in case one is deleted.
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