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counsyl

10 indexed repositories · View on GitHub

hgvs
HGVS variant name parsing and generation

Python · 177 stars
capone
Provides double-entry bookkeeping in Django with the ability to link Django objects as evidence for a transaction.

Python · 55 stars
stor
A cross-compatible CLI and Python API for accessing block and object storage

Python · 35 stars
puppet-windows
Puppet configurations for common Windows administration

Puppet · 29 stars
counsyl-pyads
A Python implementation of the Twincat ADS protocol for Beckhoff PLCs

Python · 20 stars
django-pedant
Make django templates fail fast

Python · 13 stars
puppet-packer
Puppet module for installing Packer, the virtual machine image creation tool.

Puppet · 11 stars
puppet-sys
Puppet module for general operating system and essential program management.

Puppet · 11 stars
vagrant-darwin
Vagrant plugin for Darwin (OS X) guest support

Ruby · 5 stars
puppet-vagrant
Puppet module for installing and configuring Vagrant.

Puppet · 1 star

Open All

VirtualBox *does* support macOS guests Open

counsyl/vagrant-darwin#2 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Unable to get fail_on_template_errors working with class based views Open

counsyl/django-pedant#5 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
read_ny_name problem Open

counsyl/counsyl-pyads#2 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
metadata.json does not list puppet version compatibility Open

counsyl/puppet-packer#11 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
wget dependency conflicts with another wget module Open

counsyl/puppet-packer#12 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Create facter fact around packer version. Open

counsyl/puppet-packer#13 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Consider validating download with GPG Open

counsyl/puppet-packer#14 · 0 comments · 2 reactions · 0 assignees · Indexed Sep 15, 2026
windows::unzip not ordering correctly? Open

counsyl/puppet-windows#10 · 6 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
windows::regsvr32 files getting registered multiple times. template code that runs on unless doesn't always find registered control Open

counsyl/puppet-windows#11 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
java does not work for Java 8u121 Open

counsyl/puppet-windows#15 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Any special reason why puppetlabs modules in metadata.json has upper limit of versions? Open

counsyl/puppet-windows#23 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
windows::unzip should fail if file does not exist Open

counsyl/puppet-windows#26 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Security issue with autologon Open

counsyl/puppet-windows#28 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
shortcut does not have an `ensure` target, making it impossible to remove said shortcut. Open

counsyl/puppet-windows#29 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
the link to windows::update source info is broken: Open

counsyl/puppet-windows#30 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
can pass version from profile Open

counsyl/puppet-vagrant#4 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
enhancement - add compatibility with RNA and non-coding RNA sequences Open

counsyl/hgvs#7 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Rename repository to pyhgvs? Open

counsyl/hgvs#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
update of genes.refGene files Open

counsyl/hgvs#26 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
add pip install Open

counsyl/hgvs#27 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
how to get genes.refGene with version Open

counsyl/hgvs#28 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Incorrect translation when the HGVS string does not contain a reference or alt allele Open

counsyl/hgvs#32 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Unable to parse a HGVS variant in format that VEP accepts Open

counsyl/hgvs#35 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add NC_ALLELE parse Open

counsyl/hgvs#36 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
how to create or find "genes.refGene" file for hg19 and hg38 Open

counsyl/hgvs#39 · 11 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
how to get coordinate of "AB026906.1:c.40_42del" by hgvs code Open

counsyl/hgvs#40 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Is there a way to use this to convert protein HGVS to genome space VCF coordinates? Open

counsyl/hgvs#44 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Incorrect HGVS to VCF conversion for some genomic indels Open

counsyl/hgvs#50 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
pyhgvs normalize is right,but not give base number instead of base itself Open

counsyl/hgvs#52 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
how to get pdot Open

counsyl/hgvs#56 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
dup longer than 100 bases converted back to delins (due to hardcoding of 100 in code) Open

counsyl/hgvs#57 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Support inversions (inv) Open

counsyl/hgvs#58 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Python3 version Open

counsyl/hgvs#59 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
HGVS / genome coordinate conversion does not account for cDNA alignment gaps Open

counsyl/hgvs#60 · 1 comment · 1 reaction · 0 assignees · Indexed Sep 15, 2026
Reference HGVS without reference base leads to wrong coordinates and reference allele Open

counsyl/hgvs#61 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Announcing cdot - a way to load lots of transcripts fast Open

counsyl/hgvs#62 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
hgvs/pyhgvs/data/genes.refGen file Open

counsyl/hgvs#63 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
how to Check whether p.val meets the HGVS specification Open

counsyl/hgvs#64 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Question about the Transformation Result Open

counsyl/hgvs#67 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
pyhgvs is no longer maintained... migration guide to biocommons HGVS Open

counsyl/hgvs#68 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Issue with installing cryptsetup on RHEL7 Open

counsyl/puppet-sys#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
epel-release-7-6.noarch.rpm no longer available Open

counsyl/puppet-sys#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Add support for STDLIB 5 Open

counsyl/puppet-sys#30 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Timeout default of '0' breaks powershell Open

counsyl/puppet-sys#31 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Unknown variable for sys::zsh Open

counsyl/puppet-sys#34 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Drop Django 1.8 and add Django 2 support Open

counsyl/capone#12 · 0 comments · 2 reactions · 0 assignees · Indexed Sep 15, 2026
Support for Django 3.X Open

counsyl/capone#18 · 0 comments · 1 reaction · 0 assignees · Indexed Sep 15, 2026
support for hierarchal accounting and multi currency Open

counsyl/capone#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Reviving and modernising Capone Open

counsyl/capone#24 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 15, 2026
Change default settings to not leave segments Open

counsyl/stor#20 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 15, 2026

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