add warning in update_zygosities when no rule is found for a test
Open
@rossant is already working on this.
Since Mar 14, 2018.
enhancement
priority: high
- Dominant language
- Python
- Stars
- 52
- Forks
- 12
- Avg merge
- 1d 11h
- Merged PRs (30d)
- 4
Description
If a subject has a genotype test, but there is no rule found for this test, please give a warning in the update_zygosities script. E.g. if mouse M_0011 has eGFP+, but there is no rule about test "eGFP" for its line, give a warning like "Warning: subject M_0011: No zygosity rule found for test eGFP for line RCLcg.Vg".
This will help detect cases in which the rule hasn't been specified (the problem I was fixing last week) and cases when the rule accidentally refers to the wrong genotype test (the problem I'm about to be fixing now... :( ).
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