common-workflow-language / common-workflow-language/cwl-utils
schema_salad.exceptions.ValidationExceptions parsing certain data structures
- Langage dominant
- Python
- Étoiles
- 43
- Forks
- 28
- Merge moyen
- 4 h 7 min
- PR mergées (30 j)
- 4
Description
```
import cwl_utils.parser_v1_2 as parser
parser.load_document("https://raw.githubusercontent.com/common-workflow-library/bio-cwl-tools/release/picard/picard_CreateSequenceDictionary.cwl")
```
```
InitialWorkDirRequirement:
listing:
- $(inputs.REFERENCE)
```
```
outputs:
...
sequences_with_dictionary:
type: File
format: edam:format_2573 # SAM
secondaryFiles:
- .dict
- .fai
```
```
parser.load_document("https://raw.githubusercontent.com/common-workflow-library/bio-cwl-tools/release/bamtools/bamtools_stats.cwl")
```
```
bamtools_stats.cwl:110:5: the `outputBinding` field is not valid...
the `outputEval` field is not valid...
```
Guide de contribution
Ouvrir le guide de contribution
Évaluation
Cette issue n'a pas encore été évaluée.