common-workflow-language / common-workflow-language/cwl-utils
schema_salad.exceptions.ValidationExceptions parsing certain data structures
- Dominant language
- Python
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- 43
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- Avg merge
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- Merged PRs (30d)
- 4
Description
```
import cwl_utils.parser_v1_2 as parser
parser.load_document("https://raw.githubusercontent.com/common-workflow-library/bio-cwl-tools/release/picard/picard_CreateSequenceDictionary.cwl")
```
```
InitialWorkDirRequirement:
listing:
- $(inputs.REFERENCE)
```
```
outputs:
...
sequences_with_dictionary:
type: File
format: edam:format_2573 # SAM
secondaryFiles:
- .dict
- .fai
```
```
parser.load_document("https://raw.githubusercontent.com/common-workflow-library/bio-cwl-tools/release/bamtools/bamtools_stats.cwl")
```
```
bamtools_stats.cwl:110:5: the `outputBinding` field is not valid...
the `outputEval` field is not valid...
```
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