Exporting and importing locally gives "no such table: main.User: SQLITE_ERROR"

### What versions & operating system are you using?

wrangler 4.16.1

### Please provide a link to a minimal reproduction

_No response_

### Describe the Bug

I follow this article how to export and import d1.
https://developers.cloudflare.com/d1/best-practices/import-export-data/#export-an-existing-d1-database

```
npx wrangler d1 export xyz --remote --output=./database.sql
```

I remove `rm -rf .wrangler`

and then running
```
npx wrangler@latest d1 execute xyz-staging --file=database.sql
```

The sql file looks correct, but it looks like the export is not doing it correct in order

You can see that _userOrganizations depends on User which has not been created yet, and if I switch the order then I get another SQL error about another table which does not exist.

### Please provide any relevant error logs

[wrangler-2025-05-23_10-58-30_040.log](https://github.com/user-attachments/files/20409177/wrangler-2025-05-23_10-58-30_040.log)