ccpem/roodmus

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Stars: 8
Forks: 0
Open beginner issues: 0
Indexed issues: 25

Dominant language: Jupyter Notebook
License: GPL-3.0
Last GitHub push: Oct 15, 2024
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

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25 open issues indexed

Particle distribution in micrographs Open

bug understanding Parakeet v0.3.0

ccpem/roodmus#7 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Look into cisTEM for micrograph simulation Open

enhancement wontfix

ccpem/roodmus#11 · 5 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Update plot formatting Open

v0.3.0

ccpem/roodmus#12 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add CONTRIBUTING.md to repo Open

ccpem/roodmus#14 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
add .cff file (for easy citation) with doi to repo Open

ccpem/roodmus#15 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Refactor num_ugraphs to be implemented within analysis object. This resolves unnecessary matching of particles in all ugraphs in a metadata file. Open

enhancement v0.3.0

ccpem/roodmus#16 · 0 comments · 0 reactions · 2 assignees · Indexed Sep 14, 2026
Add analysis tests for per-particle defoci and 1-to-1 matching labelling Open

ccpem/roodmus#17 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Generation of the simulated Gaussian random field (GRF) ice model Open

understanding Parakeet

ccpem/roodmus#19 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
CTF simulation Open

understanding Parakeet

ccpem/roodmus#21 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
MTF generation and e-/A^2/second dependence in implementation (also relation to DQE) Open

understanding Parakeet

ccpem/roodmus#22 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
inelastic scattering models Open

understanding Parakeet

ccpem/roodmus#23 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Parameters for noisy, radiation damaged, inelastic scattering-inclusive, fractionated dataset generation Open

ccpem/roodmus#26 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Roodmus v0.3.0 utilities Open

ccpem/roodmus#28 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
plot_ctf incorrect CTF Open

bug v0.3.0

ccpem/roodmus#31 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
integration test for heterogeneity module Open

enhancement v0.3.0

ccpem/roodmus#33 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Setup sphinx docs Open

documentation v0.3.0

ccpem/roodmus#35 · 2 comments · 0 reactions · 2 assignees · Indexed Sep 14, 2026
Sort out het_metrics.log file Open

enhancement v0.3.0

ccpem/roodmus#37 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Updating roodmus to use parakeet v0.6.X Open

ccpem/roodmus#44 · 17 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Improved parallelization with mpi Open

enhancement

ccpem/roodmus#45 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Non-uniform placement of particles in the virtual sample Open

enhancement

ccpem/roodmus#46 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
BIM model incompatible with atomic ice generation Open

bug v0.3.0

ccpem/roodmus#48 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
solvent noise model Open

ccpem/roodmus#51 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Check beam-induced motion model Open

ccpem/roodmus#52 · 3 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Ice thickness variation Open

enhancement

ccpem/roodmus#55 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Parakeet does not generate uniformly sampled poses Open

bug

ccpem/roodmus#56 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

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