carpentries-incubator / carpentries-incubator/spatial-transcriptomics

Deconvolution episode: Create pre-processed files

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Description

In the"Loading scRNA-seq reference data" section, we have a large data wrangling block that can be removed if we preprocess the scRNASeq data. We should do the preliminary data wrangling so that students can read in single cell counts and metadata and focus on the lesson, not data wrangling.

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