cancerDHC/example-data

View on GitHub

This repository is intended to act as a store of example data files from across the NCI Cancer Research Data Commons (CRDC) nodes in a number of formats.

Stars: 0
Forks: 3
Open beginner issues: 0
Indexed issues: 23

Dominant language: Jupyter Notebook
License: MIT
Last GitHub push: Jan 7, 2022
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue
PR merge metrics: No merged PRs in 30d

Open All

23 open issues indexed

Add support for additional Jupyter Notebook tools Open

cancerDHC/example-data#5 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add support for extracting the full sample/portion/analyte hierarchy from GDC Open

good first issue use case

cancerDHC/example-data#6 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add PDC import and show how the CCDH model can be used to synthesize data between GDC and PDC Open

use case

cancerDHC/example-data#9 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Create example CRDC-H files in several formats and ensure that they can be validated Open

cancerDHC/example-data#10 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add a LICENSE file to this repository Open

good first issue

cancerDHC/example-data#12 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add `@type` to the JSON-LD output Open

bug good first issue

cancerDHC/example-data#15 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add code and data to query multiple nodes and convert the resulting data into the CRDCH model Open

cancerDHC/example-data#16 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Integrate Jupyter Notebooks into automated testing Open

enhancement

cancerDHC/example-data#18 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Document a flow for new use cases to be proposed and developed Open

cancerDHC/example-data#19 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Cannot install `pandas` on my computer: odd `numpy` error Open

cancerDHC/example-data#23 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Update Jupyter Notebooks to use crdch_model from Pipfile Open

cancerDHC/example-data#25 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
update notebooks: switch from enums to codable concepts Open

cancerDHC/example-data#27 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Think about removing spaces from filenames in this repo Open

cancerDHC/example-data#29 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Try out JSON-based methods for recording provenance Open

cancerDHC/example-data#30 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Ongoing discussion about where to find mappings for terms as well as values Open

cancerDHC/example-data#31 · 4 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Implement example mapping activities as APIs Open

cancerDHC/example-data#34 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Tools team's responsibility for secure computing and Authority to Operate? Open

cancerDHC/example-data#35 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Conversion examples for Clinical Trials Data Commons? Open

cancerDHC/example-data#36 · 2 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Rename `example-data` repo to something more self explanatory? Open

question

cancerDHC/example-data#38 · 5 comments · 0 reactions · 2 assignees · Indexed Sep 14, 2026
Uncomment non-validating data from the CCDH Pilot examples and fix CRDCH model so that they work correctly Open

cancerDHC/example-data#39 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Fix bugs in automated GDC to CRDCH transformation script Open

cancerDHC/example-data#40 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Remove direct link to CRDCH schema Open

cancerDHC/example-data#45 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add pytest-cov to test coverage of the generated Python classes Open

cancerDHC/example-data#46 · 0 comments · 0 reactions · 0 assignees · Indexed Sep 14, 2026

cancerDHC/example-data

Get new issues in your inbox