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campaslab

3 indexed repositories · View on GitHub

napari-stress
Interactive surface analysis in napari for bio-mechanical stress measurement

Python · 18 stars
STRESS

Python · 8 stars
Osmotic-Pressure-droplet-volume-reading
Code assocaiated to the article In situ quantification of osmotic pressure within living embryonic tissues

MATLAB · 0 stars

Beginner friendly Everything

Open All

Possible argument-order bug in sph_harm → sph_harm_y migration Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 74/100

campaslab/napari-stress#426 · 1 reaction · Opened Jul 24, 2026
Point cloud vtp file output only in "interactive usage" but not in "from code" Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#424 · Opened Jan 16, 2026
Physical units in final output Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

campaslab/napari-stress#423 · Opened Jul 29, 2025
Stratify tests Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#405 · Opened Apr 30, 2025
output figure: Stresses_cell Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#401 · 1 comment · Opened Apr 1, 2025
screentshot of napari stress Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

campaslab/napari-stress#399 · Opened Mar 24, 2025
Empty values in tissue stress autocorrelation Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

campaslab/napari-stress#397 · Opened Mar 24, 2025
Use `napari-timelapse-processor` instead of internal `frame_by_frame` Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#382 · Opened Aug 8, 2024
Glossary add-on Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#379 · 1 comment · Opened Jul 17, 2024
Clarify documentation Open

documentation

Difficulty 1/5 Under an hour Newbie friendliness 45/100

campaslab/napari-stress#377 · Opened Jul 17, 2024
No data plotted :( Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

campaslab/napari-stress#360 · 2 comments · Opened Apr 5, 2024
Correct Voxel Size in Sample Data Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/STRESS#4 · Opened Jan 15, 2024
Rename Output Image Files from Droplet Reconstruction Tool box Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

campaslab/STRESS#3 · Opened Jan 15, 2024
Measuring intensities on rescaled images Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#352 · 1 comment · Opened Jan 4, 2024
Add license and Readme.md Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

campaslab/Osmotic-Pressure-droplet-volume-reading#1 · 1 comment · Opened Aug 29, 2023
Feedback on reconstruction quality confocal vs spinning disc imaging Open

Difficulty 4/5 3-5 days Newbie friendliness 18/100

campaslab/napari-stress#317 · 9 comments · Opened Jul 24, 2023
Remove numpy pin Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

campaslab/napari-stress#303 · Opened Jun 27, 2023
Quantify tissue-scale stresses along AP, ML and DV axis of Zebrafish embryo? Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

campaslab/napari-stress#300 · 1 comment · Opened Jun 16, 2023
Fix bug with surface subsampling Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 30/100

campaslab/napari-stress#298 · Opened Jun 16, 2023
Smoothing default value to higher value? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#296 · Opened Jun 16, 2023
Improve outlier removal Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

campaslab/napari-stress#295 · Opened Jun 16, 2023
Parameters in droplet reconstruction in microns Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

campaslab/napari-stress#294 · 1 comment · Opened Jun 16, 2023
Improve docstrings for spherical harmonics Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

campaslab/napari-stress#291 · Opened Jun 7, 2023
Add reference coordinate for stress projections Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

campaslab/napari-stress#290 · Opened Jun 7, 2023
Measure mean squared displacement Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#289 · Opened Jun 7, 2023
Add measurement selection to comprehensive measurement toolbox Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 45/100

campaslab/napari-stress#281 · Opened May 9, 2023
Add `frame` column to features dataframes Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

campaslab/napari-stress#276 · Opened Mar 16, 2023
Add info on how to use toolboxes Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 50/100

campaslab/napari-stress#257 · Opened Mar 1, 2023
Interactive mean curvature measurement not working Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 42/100

campaslab/napari-stress#233 · Opened Jan 26, 2023
Visualizing `mean_curvature` on lebedev quadrature throws error Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

campaslab/napari-stress#232 · 1 comment · Opened Jan 26, 2023
Consider moving measurements to other Tools menu Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#225 · 1 comment · Opened Jan 22, 2023
Open file dialogue in analyze_everything notebook to select file Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#216 · Opened Nov 18, 2022
Documentation pointing to `Plugins` menu Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

campaslab/napari-stress#208 · Opened Nov 11, 2022
Add more description to `Analyze_everything.ipynb` Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

campaslab/napari-stress#204 · Opened Nov 8, 2022
Remove binarization and labeling from droplet reconstruction toolbox Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#186 · Opened Oct 26, 2022
napari_stl_exporter not found Open

Difficulty 2/5 1-3 hours Newbie friendliness 38/100

campaslab/napari-stress#175 · Opened Oct 21, 2022
`Mean curvature on manifold` throws error if `ImageData` in layer list Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

campaslab/napari-stress#164 · Opened Sep 26, 2022
Trace-Refine Surface Points Error Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#160 · 2 comments · Opened Sep 22, 2022
'mean_curvature_on_manifold' feature not showing Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/napari-stress#149 · 1 comment · Opened Sep 7, 2022
Add `frame_by_frame` to `perform_lebedev_quadrature` Open

bug core functionality

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

campaslab/napari-stress#148 · Opened Aug 30, 2022
Add measurement for vector length Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#126 · Opened Aug 8, 2022
Move timelapse converter upstream Open

help wanted nice to have

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#104 · Opened Jul 28, 2022
Improve code quality Open

nice to have

Difficulty 3/5 1-2 days Newbie friendliness 42/100

campaslab/napari-stress#96 · Opened Jul 9, 2022
Spherical harmonics coefficients formatting Open

enhancement nice to have

Difficulty 3/5 1-2 days Newbie friendliness 25/100

campaslab/napari-stress#86 · 16 comments · Opened Jun 17, 2022
Empty output directories Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

campaslab/STRESS#1 · 1 comment · Opened Jun 14, 2022
Make napari-stress available on conda-forge Open

nice to have

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#76 · Opened Jun 5, 2022
Dependency conflict with morphometrics Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

campaslab/napari-stress#73 · 5 comments · Opened Jun 5, 2022
Trace refinement from tools menu Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

campaslab/napari-stress#68 · 8 comments · Opened Jun 3, 2022
napari-stress ships napari==0.4.14 Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

campaslab/napari-stress#62 · 4 comments · Opened Jun 3, 2022
Check if it actually is 4D Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

campaslab/napari-stress#13 · 3 comments · Opened Apr 23, 2022

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