brainglobe / brainglobe/brainreg
Consider using voxel sizes to re-scale loaded image after registration.
Open
Nobody has claimed this yet.
enhancement
napari-plugin
- Dominant language
- Python
- Stars
- 150
- Forks
- 37
- Avg merge
- 3d 19h
- Merged PRs (30d)
- 5
Description
See image.sc issue - https://forum.image.sc/t/brainreg-error-when-checking-orientation-value-error-axes-dont-match-array/83794/9
In general though, we should rethink how the plugin works (e.g. it should operate directly on the layer, not on the data on disk).
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the linked image.sc discussion, then inspect the plugin flow that loads registered images and handles voxel sizes. Clarify whether the completed work is voxel-size rescaling, operating directly on the layer rather than disk data, or a broader redesign; agreement on scope and a reproducible validation case are needed before implementation.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- computer-vision
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100