Owner
brainglobe
24 indexed repositories · View on GitHub
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brainrender
A Python package to visualise neuroanatomical data in atlas space
Python · 670 stars
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cellfinder
Automated 3D cell detection in very large images
Python · 231 stars
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brainglobe-atlasapi
A Python interface to access neuroanatomical atlases
Python · 186 stars
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brainreg
Automated 3D brain registration with support for multiple species and atlases.
Python · 150 stars
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brainglobe-heatmap
Rendering anatomical heatmaps with brainrender and matplotlib
Python · 52 stars
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brainglobe-segmentation
Segmentation of anatomical structures in a common coordinate space
Python · 37 stars
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brainglobe-registration
Registration to BrainGlobe atlases in napari using Elastix
Python · 33 stars
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brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
Python · 24 stars
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morphapi
A Python package to download neuronal morphologies
Python · 17 stars
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brainglobe-napari-io
Read and write files from the BrainGlobe neuroanatomy suite
Python · 15 stars
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brainglobe-ccf-translator
A tool for translating between common coordinate frameworks using deformation matrices.
Python · 14 stars
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brainglobe-template-builder
Build unbiased anatomical templates from individual images
Python · 14 stars
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brainglobe.github.io
brainglobe.info website
Python · 14 stars
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brainglobe-utils
Shared general purpose tools for the BrainGlobe project
Python · 12 stars
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brainglobe-space
Anatomical space conventions made easy.
Python · 12 stars
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brainglobe-workflows
Workflows that utilise BrainGlobe tools to perform data analysis and visualisation.
Python · 12 stars
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BrainGlobe
General information, resources and dicussions for the BrainGlobe project.
11 stars
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brainglobe-meta
(Meta-)package repository for BrainGlobe's Python tools for computational neuroanatomy.
Python · 10 stars
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brainglobe-stitch
A napari plugin for stitching large tiled 3D imaging datasets
Python · 7 stars
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Python · 4 stars
- 4 more repositories live on View on GitHub
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enhancement maintenance
brainglobe/BrainGlobe#61 · 4 comments · 0 reactions · 1 assignee ·
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maintenance
brainglobe/BrainGlobe#5 · 2 comments · 0 reactions · 0 assignees ·
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Package test scripts Open
brainglobe/BrainGlobe#7 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#9 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#16 · 1 comment · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#21 · 6 comments · 3 reactions · 1 assignee ·
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brainglobe/BrainGlobe#24 · 1 comment · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#25 · 2 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#26 · 1 comment · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#69 · 1 comment · 0 reactions · 0 assignees ·
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Develop metaplugin Openenhancement
brainglobe/BrainGlobe#40 · 1 comment · 1 reaction · 0 assignees ·
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enhancement
brainglobe/BrainGlobe#48 · 1 comment · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#53 · 4 comments · 0 reactions · 1 assignee ·
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enhancement maintenance
brainglobe/BrainGlobe#55 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#62 · 1 comment · 2 reactions · 0 assignees ·
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brainglobe/BrainGlobe#68 · 0 comments · 0 reactions · 0 assignees ·
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enhancement maintenance
brainglobe/BrainGlobe#74 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#77 · 1 comment · 0 reactions · 1 assignee ·
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enhancement good first issue maintenance
brainglobe/BrainGlobe#83 · 2 comments · 1 reaction · 0 assignees ·
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brainglobe/BrainGlobe#85 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#87 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#88 · 3 comments · 0 reactions · 0 assignees ·
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enhancement maintenance
brainglobe/BrainGlobe#90 · 2 comments · 0 reactions · 0 assignees ·
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enhancement
brainglobe/BrainGlobe#91 · 0 comments · 2 reactions · 0 assignees ·
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enhancement
brainglobe/BrainGlobe#92 · 3 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#93 · 5 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#94 · 1 comment · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#95 · 3 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#96 · 2 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#98 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/BrainGlobe#99 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/napari-experimental#1 · 1 comment · 0 reactions · 3 assignees ·
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brainglobe/napari-experimental#23 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/napari-experimental#36 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/napari-experimental#41 · 1 comment · 0 reactions · 0 assignees ·
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brainglobe/atlas-forge#12 · 5 comments · 0 reactions · 0 assignees ·
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brainglobe/atlas-forge#16 · 4 comments · 0 reactions · 0 assignees ·
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brainglobe/atlas-forge#28 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/atlas-forge#31 · 1 comment · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-data-api-volume#2 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-data-api-volume#3 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-data-api-volume#4 · 9 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-data-api-volume#7 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-ccf-translator#1 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-ccf-translator#3 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-ccf-translator#5 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-ccf-translator#6 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-ccf-translator#8 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-ccf-translator#9 · 0 comments · 0 reactions · 0 assignees ·
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brainglobe/brainglobe-ccf-translator#13 · 0 comments · 0 reactions · 0 assignees ·