brainglobe / brainglobe/brainglobe.github.io

how to warp existing annotations to a new template, using ANTs

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Python
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Description

Depends on https://github.com/brainglobe/brainglobe-napari-io/issues/118

This should take the form of a "How-to" guide in [the diataxis sense](https://diataxis.fr/how-to-guides/).

It should include the required prerequisites:
* a python environment with `brainglobe-registration` installed.
* the new template
* the desired annotations as a starting point for the new template

And the steps will include~
* ANTs command for finding the registration map between the old template (with the desired annotations) and the new template
* ANTs command for applying the registration map to the annotations

Contributor guide

Open the contributing guide

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