brainglobe / brainglobe/brainglobe.github.io
how to warp existing annotations to a new template, using ANTs
Open
- Dominant language
- Python
- Stars
- 14
- Forks
- 32
- Avg merge
- 1d 22m
- Merged PRs (30d)
- 9
Description
Depends on https://github.com/brainglobe/brainglobe-napari-io/issues/118
This should take the form of a "How-to" guide in [the diataxis sense](https://diataxis.fr/how-to-guides/).
It should include the required prerequisites:
* a python environment with `brainglobe-registration` installed.
* the new template
* the desired annotations as a starting point for the new template
And the steps will include~
* ANTs command for finding the registration map between the old template (with the desired annotations) and the new template
* ANTs command for applying the registration map to the annotations
Contributor guide
Assessment
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