brainglobe / brainglobe/brainglobe-data-api-connectivity

`polars` for data file conversion too

Open
#7 0 comments 0 reactions 0 assignees View on GitHub
enhancement good first issue
Dominant language
Python
Stars
2
Forks
1
Avg merge
3d 13h
Merged PRs (30d)
2

Description

Before #4, `pandas` was our go-to choice for handling the Excel file-formatted data that the connectivity information was given to us in. #2 currently exists to turn this into a proper workflow.

Once we have #2 working and merged (using `pandas`), we should then convert the functions across to use `polars` instead - which we suspect will be faster and also avoids us using two different dataframe libraries.

Contributor guide

Open the contributing guide

Research direction

Start by reading issue #2 and the existing pandas-based workflow referenced there, then review the functions that handle the Excel-formatted connectivity data. This work should wait until #2 is merged; it is done when those functions have been converted to polars without retaining two dataframe libraries.

Written by the indexing model from the issue text.

Assessment

Tech stack
pandas, python
Domain
data-engineering
Issue type
Refactor
Difficulty
4/5
Estimated time
3-5 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
42/100

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