biosustain / biosustain/dsp_transcriptomics_training
Show changed log2 fold change after shrinkage step
- Dominant language
- HTML
- Stars
- 8
- Forks
- 3
- PR merge metrics
- No merged PRs in 30d
Description
Highlight the change using a scatter plot where we expect low count values (1 vs 3 in raw counts) more than for higher ones (100 vs 300 in raw counts) using a MA-plot.
Add plot to:
https://biosustain.github.io/dsp_transcriptomics_training/log2-fold-change-shrinkage.html
similar to
https://biosustain.github.io/dsp_transcriptomics_training/ma-plot.html
Contributor guide
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Research direction
Start by reading log2-fold-change-shrinkage.html and compare it with the existing ma-plot.html page. Add a MA-plot showing how shrinkage changes log2 fold changes, with the low-count and high-count examples described in the issue; the page should clearly highlight that difference.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- html
- Domain
- data-visualization, documentation
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 72/100