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biosustain

45 indexed repositories · View on GitHub

• cameo

  cameo - computer aided metabolic engineering & optimization

  Python · 129 stars

• shu

  Multi-dimensional, trans-omics metabolic maps.

  Rust · 56 stars

• snakemake_UmetaFlow

  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake

  Python · 32 stars

• croissance

  Tool for estimating growth rates from microbial growth curves

  Python · 32 stars

• Maud

  Enzyme models that take into account kinetics, allostery and thermodynamics

  Python · 29 stars

• pyOpenMS_UmetaFlow

  Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)

  Jupyter Notebook · 23 stars

• ancestry

  AngularJS module with interactive lineage chart components based on D3.js

  JavaScript · 17 stars

• venom

  A transport-agnostic RPC framework for Python

  Python · 16 stars

• flask-graphql-rest

  Flask extension to expose a GraphQL API as REST API

  Python · 10 stars

• multitfa

  Multivariate thermodynamics-based metabolic flux analysis in Python.

  Python · 9 stars

• pseudobatch

  The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, t...

  Jupyter Notebook · 9 stars

• potion-node

  TypeScript client for Flask-Potion

  TypeScript · 8 stars

• dsp_transcriptomics_training

  Introduction course to transcriptomics

  HTML · 8 stars

• growthcurves

  Calculate the most relevant growth curve parameters with different methods (models, sliding window, etc.)

  Jupyter Notebook · 8 stars

• p-thermo

  Genome-scale metabolic model of P. thermoglucosidasius NCIMB 11955

  HTML · 7 stars

• incawrapper

  A python wrapper for Metabolic Flux Analysis (MFA) using INCA with additional functionalities

  Python · 7 stars

• gnomic

  A grammar for describing microbial genotypes and phenotypes

  Python · 5 stars

• Growth-coupling-suite

  A constraint-based metabolic model-based workflow for computing and analyzing microbial strain designs which couple a target reaction to ...

  Python · 5 stars

• iVnat

  Draft genome-scale metabolic model of Vibrio natriegens

  Jupyter Notebook · 4 stars

• trp-scores

  Code used for scoring genes as candidates for increased tryptophan production

  MATLAB · 4 stars

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