biocore/qurro

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Visualize differentially ranked features (taxa, metabolites, ...) and their log-ratios across samples

Stars: 35
Forks: 10
Open beginner issues: 0
Indexed issues: 123

Dominant language: JavaScript
License: BSD-3-Clause
Last GitHub push: Apr 4, 2025
Latest indexed: Sep 14, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue
PR merge metrics: No merged PRs in 30d

Open All

123 open issues indexed

Ensure that interactions work when done in piecemeal Open

important

biocore/qurro#5 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add option to take log geometric mean of abundances when using multiple taxa Open

enhancement

biocore/qurro#18 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Fuzzy searching for taxa Open

enhancement future ideas

biocore/qurro#24 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Dynamically set plot dimensions based on available size in their parent <div> Open

enhancement

biocore/qurro#32 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add copyright heading to all code files Open

administrative

biocore/qurro#34 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
"Assert" various properties of the input Open

enhancement

biocore/qurro#50 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Visualize ranks based on magnitude/direction of other ranks Open

enhancement future ideas

biocore/qurro#59 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
double-check data/dataframe types in code Open

optimization

biocore/qurro#62 · 4 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Ensure that copies are made of passed DataFrames Open

optimization

biocore/qurro#63 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Escape brackets/periods/backslashes/quotes in input rank IDs and sample metadata fields, and in any "inputs" to plot JSONs Open

bug external

biocore/qurro#66 · 6 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Make rank plot legend dynamic Open

enhancement

biocore/qurro#67 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Detect types of sample metadata columns and use them when setting scale type when changing fields Open

enhancement

biocore/qurro#73 · 3 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Support not having an assigned color in sample plot Open

backburner enhancement

biocore/qurro#77 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add window selection in the rank plot Open

enhancement

biocore/qurro#83 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Minify static HTML/JS/CSS resources Open

optimization

biocore/qurro#86 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add button to "switch" numerator and denominator Open

enhancement

biocore/qurro#90 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add parameter for taking only the n most "extreme" features Open

enhancement optimization

biocore/qurro#94 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Switch up column mapping Open

backburner optimization

biocore/qurro#99 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Improve loading "experience" for users Open

enhancement

biocore/qurro#108 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Integration with other visualization tools for 'omic data Open

future ideas interoperability

biocore/qurro#109 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Clear inputs/etc. on pressing "back" to get to the visualization Open

bug

biocore/qurro#112 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Fully stop the rank plot title/legend/... moving around when you pan/zoom Open

enhancement

biocore/qurro#114 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add -x option, but with a harder limit on the number of included features Open

enhancement

biocore/qurro#115 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Compute p-values, correlation coefficients, etc. in the browser? Open

backburner enhancement

biocore/qurro#117 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
By default, apply -x option if amount of count data stored exceeds a certain limit? Open

future ideas

biocore/qurro#118 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
fix the positioning of the "actions" element from Vega-Embed Open

bug

biocore/qurro#120 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Look out for maximum canvas size via supporting SVG plots Open

external important

biocore/qurro#121 · 2 comments · 1 reaction · 1 assignee · Indexed Sep 14, 2026
Update plot labels more re: selected features Open

enhancement

biocore/qurro#122 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Automatically update web test index.html when the normal index.html changes Open

optimization

biocore/qurro#126 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Fix the "flash of unstyled content" problem Open

enhancement

biocore/qurro#129 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Make x-axis ticks in (now ordinal) rank plot look prettier Open

enhancement

biocore/qurro#130 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Better support for time series sample metadata Open

future ideas

biocore/qurro#131 · 1 comment · 0 reactions · 0 assignees · Indexed Sep 14, 2026
Add controls for adjusting sample plot element size Open

enhancement

biocore/qurro#133 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
"Joint" searching queries across multiple feature ranking/metadata fields Open

enhancement important

biocore/qurro#140 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Make sure that, if --rank 2 was passed to deicode, a third PC rank isn't shown in the ranking selection options Open

bug external

biocore/qurro#146 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add controls to change quantitative sample plot x-axis/color scale type (e.g. log scales) Open

enhancement

biocore/qurro#147 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Auto-sync README with GitHub Pages site Open

administrative docs

biocore/qurro#150 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Use webpack + a package.json file to build JS code Open

future ideas optimization

biocore/qurro#151 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Split up RRVDisplay tests into separate modules Open

optimization

biocore/qurro#161 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Remove redundant code in tests that use RRVDisplay objects Open

optimization

biocore/qurro#162 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Redundant conversion of feature ranks to numeric type Open

optimization

biocore/qurro#165 · 2 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
When validating rank/sample plot JSONs, loop over reference features/samples instead of JSONs Open

optimization

biocore/qurro#167 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Update page CSS on rank plot color change Open

enhancement

biocore/qurro#170 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Show numbers of zeroes in numerator/denominator/both in log ratio sample dropping stats Open

enhancement

biocore/qurro#173 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Don't take the transpose of count JSON data Open

backburner optimization

biocore/qurro#175 · 1 comment · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Add noscript code to Qurro's HTML Open

backburner enhancement

biocore/qurro#177 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Show non-log ratio of features? Open

backburner enhancement

biocore/qurro#178 · 5 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
allow for search text input boxes to be resized Open

enhancement

biocore/qurro#179 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Only store input data in a single place in the repo Open

administrative optimization

biocore/qurro#182 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026
Compute balances using web workers Open

optimization

biocore/qurro#185 · 0 comments · 0 reactions · 1 assignee · Indexed Sep 14, 2026

biocore/qurro

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