`external/gazelle~~go_deps~com_github_dougthor42_go_tree_sitter/python/scanner.c:1:10: fatal error: '../array.h' file not found` with gazelle 0.38+

# 🐞 bug report

### Affected Rule

The issue is caused by the rule: rules_python_gazelle_plugin (version 1.1.0) when running with gazelle 0.38+

### Is this a regression?

Maybe, the issue starts with gazelle 0.38

### Description

A clear and concise description of the problem...
When running gazelle `bazel run //python:gazelle update` go_tree_sitter fails to build

This is using the config from https://github.com/bazelbuild/rules_python/tree/main/examples/bzlmod_build_file_generation

When downgrading gazelle to 0.37 it runs (at the expense of features in go, namely the `build_file_generation = "clean"` which was introduced in 0.38)

The issue seems linked to https://github.com/smacker/go-tree-sitter/issues/175

## 🔬 Minimal Reproduction

https://github.com/bazelbuild/rules_python/tree/main/examples/bzlmod_build_file_generation with gazelle 0.38+

## 🔥 Exception or Error

INFO: Analyzed target //python:gazelle (51 packages loaded, 282 targets configured).

ERROR: /private/var/tmp/_bazel_ripper/5d3e93b0f5b6e19252cd0dca794d49db/external/gazelle~~go_deps~com_github_dougthor42_go_tree_sitter/python/BUILD.bazel:3:11: GoCompilePkg external/gazelle~~go_deps~com_github_dougthor42_go_tree_sitter/python/python.a failed: (Exit 1): builder failed: error executing GoCompilePkg command (from target @@gazelle~~go_deps~com_github_dougthor42_go_tree_sitter//python:python) bazel-out/darwin_x86_64-opt-exec-ST-d57f47055a04/bin/external/rules_go~~go_sdk~myproject__download_0/builder_reset/builder compilepkg -sdk external/rules_go~~go_sdk~myproject__download_0 -goroot ... (remaining 43 arguments skipped)

Use --sandbox_debug to see verbose messages from the sandbox and retain the sandbox build root for debugging

external/gazelle~~go_deps~com_github_dougthor42_go_tree_sitter/python/scanner.c:1:10: fatal error: '../array.h' file not found

#include "../array.h"

         ^~~~~~~~~~~~

1 error generated.

compilepkg: error running subcommand external/toolchains_llvm~~llvm~llvm_toolchain/bin/cc_wrapper.sh: exit status 1

Target //python:gazelle failed to build

Use --verbose_failures to see the command lines of failed build steps.

INFO: Elapsed time: 29.799s, Critical Path: 5.75s

INFO: 33 processes: 9 internal, 24 darwin-sandbox.

ERROR: Build did NOT complete successfully

ERROR: Build failed. Not running target

## 🌍 Your Environment

**Operating System:**

  

Mac OS 15.1.1 (24B91) Intel

  

**Output of `bazel version`:**

  

Build label: 7.4.1-homebrew

Build target: @@//src/main/java/com/google/devtools/build/lib/bazel:BazelServer

Build time: Tue Jan 1 00:00:00 1980 (315532800)

Build timestamp: 315532800

Build timestamp as int: 315532800

  

**Rules_python version:**

  

bazel_dep(name = "rules_python", version = "1.1.0")

bazel_dep(name = "rules_python_gazelle_plugin", version = "1.1.0")

  

**Anything else relevant?**

Start with examples/bzlmod_build_file_generation and its Gazelle configuration, then compare behavior with Gazelle 0.37 and 0.38+. Inspect the generated external/.../go_tree_sitter/python/BUILD.bazel target and the reported python/scanner.c include of ../array.h. Done means `bazel run //python:gazelle update` builds successfully with Gazelle 0.38+.

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