Owner
aplbrain
31 indexed repositories · View on GitHub
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grand-cypher
Implementation of the Cypher language for searching NetworkX graphs
Python · 129 stars
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grand
Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.
Python · 116 stars
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npyjs
Read numpy .npy files in JavaScript
TypeScript · 99 stars
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grandiso-networkx
Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
Python · 66 stars
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Python · 17 stars
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bossdb_cookbook
The BossDB Cookbook is a collection of introductory notebooks and examples for interfacing with the BossDB system.
Jupyter Notebook · 6 stars
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cloudome
Execute highly parallelizable jobs on volumetric neuroscience datasets
Python · 6 stars
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Python · 4 stars
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Python · 4 stars
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pm2m
Probabilistic motifs to models
Jupyter Notebook · 4 stars
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colocar
tools for sparse human annotation of three-dimensional [neuroscience] datasets
JavaScript · 4 stars
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bossypaints
Web-based dense annotation tool for connectomics
Svelte · 3 stars
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bossphorus-python
bossphorus is a simple volumetric datastore for dense 3D data.
Python · 2 stars
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BENCHMARK-Metadata
Metadata specification and upload instructions for BossDB images, experiments, and annotations
2 stars
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bossphorus
A BossDB-like volumetric datastore in Rust
Rust · 1 star
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Rust · 1 star
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bossdb-rag-chatbot
A Language Interface to the BossDB Ecosystem
Python · 1 star
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TypeScript · 1 star
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TypeScript · 1 star
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vsvi2precomputed
Script to convert VSVI (used in VAST) image datasets to precomputed volumes
Python · 1 star
- 11 more repositories live on View on GitHub
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enhancement good first issue performance
aplbrain/bossphorus-python#7 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/grandiso-cloud#4 · 1 comment · 0 reactions · 0 assignees ·
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aplbrain/grandiso-cloud#7 · 0 comments · 0 reactions · 1 assignee ·
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enhancement
aplbrain/bossphorus#6 · 0 comments · 0 reactions · 1 assignee ·
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[ChunkedBloscFileDataManager] Save data to disk in a SEPARATE thread as returning data to the user Openenhancement
aplbrain/bossphorus#7 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
aplbrain/bossphorus#8 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/bossphorus#11 · 3 comments · 0 reactions · 0 assignees ·
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aplbrain/bossphorus#16 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
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bug
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bug
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bug
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enhancement
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bug
aplbrain/saber#10 · 0 comments · 0 reactions · 2 assignees ·
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aplbrain/saber#11 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
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enhancement
aplbrain/saber#19 · 0 comments · 0 reactions · 3 assignees ·
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aplbrain/saber#31 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/saber#32 · 2 comments · 0 reactions · 3 assignees ·
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enhancement
aplbrain/saber#36 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/saber#40 · 0 comments · 0 reactions · 0 assignees ·
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bug
aplbrain/saber#44 · 0 comments · 0 reactions · 2 assignees ·
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aplbrain/neuroglancer-segment-properties#1 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/grandiso-networkx#28 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
aplbrain/grandiso-networkx#32 · 18 comments · 0 reactions · 1 assignee ·
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aplbrain/grandiso-networkx#34 · 4 comments · 0 reactions · 0 assignees ·
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Find Larger Matches Open
aplbrain/grandiso-networkx#36 · 0 comments · 0 reactions · 0 assignees ·
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performance
aplbrain/grandiso-networkx#38 · 1 comment · 0 reactions · 1 assignee ·
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aplbrain/grandiso-networkx#43 · 4 comments · 0 reactions · 0 assignees ·
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aplbrain/pyreconstruct-download#1 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/pyreconstruct-download#2 · 1 comment · 0 reactions · 0 assignees ·
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aplbrain/pyreconstruct-download#3 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/pyreconstruct-download#4 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/pyreconstruct-download#5 · 1 comment · 0 reactions · 0 assignees ·
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Add size limit Open
aplbrain/pyreconstruct-download#6 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/neuromorpholib#9 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/grandiso-rust#1 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
aplbrain/precomputed-rs#4 · 0 comments · 0 reactions · 0 assignees ·
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image_exp_standards
aplbrain/BENCHMARK-Metadata#10 · 1 comment · 0 reactions · 0 assignees ·
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annotation_standards
aplbrain/BENCHMARK-Metadata#11 · 0 comments · 0 reactions · 0 assignees ·
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image_exp_standards
aplbrain/BENCHMARK-Metadata#12 · 0 comments · 0 reactions · 0 assignees ·
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annotation_standards
aplbrain/BENCHMARK-Metadata#13 · 0 comments · 0 reactions · 0 assignees ·
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annotation_standards
aplbrain/BENCHMARK-Metadata#14 · 0 comments · 0 reactions · 0 assignees ·
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aplbrain/bossdb_cookbook#4 · 0 comments · 0 reactions · 1 assignee ·