angelolab / angelolab/maldi-tools
Package installation should be in user mode
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描述
*Please refer to our [FAQ](https://ark-analysis.readthedocs.io/en/latest/_rtd/faq.html) and look at our [known issues](https://github.com/angelolab/ark-analysis/issues) before opening a bug report.*
**Describe the bug**
When creating the conda environment, the `pip` installation section of the `environment.yml` file fails with the following error:
Installation Error
```shell
Successfully built maldi-tools
Installing collected packages: xmltodict, wheezy.template, threadpoolctl, pillow, natsort, joblib, charset-normalizer, scikit-learn, pyimzml, pandas, scikit-image, alpineer, maldi-tools
Attempting uninstall: pillow
Found existing installation: Pillow 10.0.0
Uninstalling Pillow-10.0.0:
Successfully uninstalled Pillow-10.0.0
Attempting uninstall: charset-normalizer
Found existing installation: charset-normalizer 3.2.0
Uninstalling charset-normalizer-3.2.0:
Successfully uninstalled charset-normalizer-3.2.0
Pip subprocess error:
ERROR: Could not install packages due to an OSError: [WinError 5] Access is denied: 'C:\\Users\\Admin\\AppData\\Local\\Temp\\pip-uninstall-1esg6wa2\\normalizer.exe'
Consider using the `--user` option or check the permissions.
```
**Expected behavior**
The installation should complete successfully.
**To Reproduce**
Run:
```shell
conda env create -f environment.yml
```
in Windows.
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