angelolab / angelolab/ark-analysis
OME-TIFF to single channel workflow fails if metadata not contained
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Descrição
**Describe the bug**
Some OME-TIFFs don't have metadata in a format that can be accessed by `tifffile`. In this case, the extractor would fail, since this is used to extract the raw channel names.
**Expected behavior**
If metadata cannot be extracted by `tifffile`, then the extractor should still work. However, the user will need to provide an explicit channel list.
Alternatively, see if there is another OME-TIFF reader that can parse these channel names.
**To Reproduce**
Luke Jones from the University of Birmingham had some example OME-TIFFs that threw an error that the metadata was `None`.
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