angelolab / angelolab/ark-analysis

Updating deepcell_visualization files after filtering for too small/too big cells from the cell table

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enhancement
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描述

After running Mesmer/deep cells, we are usually plotting the cell size from the cell_table csv and excluding cells below/above a certain threshold. Is there an option that we could update the deppcell visualization images after this removal so that the cells we have excluded won't be anymore shown as segmented cells in the image? That would be great if you could implement this in your notebook. Thanks

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