angelolab / angelolab/SpaceCat

Can SpaceCat be applied to high-resolution spatial transcriptomics like Xenium?

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Hi,

I am interested in using SpaceCat for high-resolution spatial transcriptomics data, specifically Xenium. I was wondering if SpaceCat is compatible with Xenium datasets, or if any modifications are needed to make it work effectively.

A few specific questions:

Has SpaceCat been tested with Xenium data?
Are there any preprocessing steps required to adapt Xenium outputs for SpaceCat?

Thank you for your help!

Best,
Shipeng Cheng

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