Owner

althonos

22 indexed repositories · View on GitHub

• InstaLooter

  Another API-less Instagram pictures and videos downloader. (defunct)

  Python · 2107 stars

• ffpb

  A progress bar for ffmpeg. Yay !

  Python · 323 stars

• pronto

  A Python frontend to (Open Biomedical) Ontologies.

  Python · 267 stars

• pyrodigal

  Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

  Cython · 189 stars

• pyhmmer

  Cython bindings and Python interface to HMMER3.

  Cython · 170 stars

• peptides.py

  Physicochemical properties, indices and descriptors for amino-acid sequences.

  Python · 124 stars

• fs.sshfs

  Pyfilesystem2 over SSH using paramiko

  Python · 94 stars

• lightmotif

  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

  Rust · 64 stars

• pyfamsa

  Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

  Cython · 46 stars

• fs.smbfs

  Pyfilesystem2 over SMB using pysmb

  Python · 30 stars

• pytrimal

  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

  Cython · 27 stars

• blanket

  A simple Rust macro to derive blanket implementations for your traits.

  Rust · 26 stars

• pymuscle5

  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.

  Cython · 25 stars

• gb-io.py

  A Python interface to gb-io, a fast GenBank parser written in Rust.

  Python · 24 stars

• pysylph

  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.

  Rust · 20 stars

• fs.archive

  Pyfilesystem2 for various archive filesystems

  Python · 18 stars

• pymemesuite

  Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.

  Cython · 18 stars

• pyopal

  Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

  Cython · 11 stars

• pyaragorn

  Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

  Cython · 10 stars

• pyinfernal

  Cython bindings and Python interface to Infernal 1.1.

  Cython · 10 stars

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