althonos / althonos/pyinfernal

cmbuild from pyinfernal?

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Hi Martin,

Is there a way to use pyinfernal to build new infernal profiles, similar to how cmbuild command line program does it? My issue with cmbuild is that it doesn't allow specification of the ACC or DESC fields from the command line.

The same issue exists for hmmbuild, but I was able to get around it using pyhmmer:
https://github.com/nebiolabs/domainator/blob/main/src/domainator/hmmer_build.py

I'm trying to do the same for infernal.

The simple workaround is just to use cmbuild command line and then modify the output file by adding those two new lines. But it seems more aesthetic to not do that. Also, then I'd have to double the infernal dependency, and have a dependency on the original infernal as well as on pyinfernal (as I'm using pyinfernal in other parts of the project).

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