Dentist parameters

Hi,
I managed to run the pipeline but know I am having a closer look at the options.
My goal is to be conservative with this: I ma happy to fill gaps when there is strong evidence for it but I don't want to mess up the assembly because it is pretty good overall I think.

From what I gathered form the github, --read-coverage combined with the ploidy is one very important option. Do you have any recommendation about how to obtain the coverage value ? Is there recommended tools for this ?

I am thinking I should not play much with the other parameters as I have CLR data.

Any advice on this ?

Best
Aurélien