Owner
TRON-Bioinformatics
7 indexed repositories · View on GitHub
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oblx
Reproducible generation of references and resources for next generation sequencing pipelines.
Python · 6 stars
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qualibam
A Nextflow pipeline built in nf-core style for comprehensive BAM file quality control, supporting both DNA and RNA sequencing input. Inte...
Nextflow · 5 stars
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VariantMedium
Sensitive and generalizable somatic point mutation calling with 3D DenseNets
Python · 5 stars
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tronmake-kmer-pipeline
A Snakemake workflow to build and query large scale k-mer datastructures
Python · 3 stars
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DEEPctMUT
Tumor-naïve ctDNA mutation detection pipeline
Python · 2 stars
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k4neo
k4neo enables easy screening of target sequences against a sequence database generated from a set of defined control samples. This packag...
Python · 1 star
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k4neo-index-data
k4neo sequence database of healthy and tumor tissue transcriptomes.
Shell · 0 stars
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 2/5 1-3 hours Newbie friendliness 72/100
TRON-Bioinformatics/oblx#257 ·
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TRON-Bioinformatics/oblx#256 · 1 assignee ·
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Difficulty 3/5 1-2 days Newbie friendliness 58/100
TRON-Bioinformatics/oblx#253 ·
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Difficulty 5/5 Over a week Newbie friendliness 20/100
TRON-Bioinformatics/oblx#247 ·
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TRON-Bioinformatics/oblx#235 ·
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Difficulty 3/5 1-2 days Newbie friendliness 25/100
TRON-Bioinformatics/oblx#234 ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
TRON-Bioinformatics/oblx#233 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 72/100
TRON-Bioinformatics/oblx#232 ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
TRON-Bioinformatics/oblx#229 ·
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Difficulty 1/5 1-3 hours Newbie friendliness 74/100
TRON-Bioinformatics/k4neo#25 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 55/100
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Difficulty 2/5 1-3 hours Newbie friendliness 45/100
TRON-Bioinformatics/k4neo#24 ·
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Difficulty 5/5 Over a week Newbie friendliness 20/100
TRON-Bioinformatics/k4neo#22 ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 20/100
TRON-Bioinformatics/k4neo#16 ·
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Difficulty 1/5 Under an hour Newbie friendliness 42/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 50/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 42/100
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feat: add GGCAT Open
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 30/100
TRON-Bioinformatics/k4neo#15 ·
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Difficulty 3/5 1-2 days Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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CRAM Input Openenhancement
Difficulty 3/5 1-2 days Newbie friendliness 52/100
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Difficulty 2/5 1-3 hours Newbie friendliness 35/100
TRON-Bioinformatics/oblx#226 ·
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documentation
Difficulty 3/5 1-2 days Newbie friendliness 35/100
TRON-Bioinformatics/k4neo#14 ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 2/5 1-3 hours Newbie friendliness 55/100
TRON-Bioinformatics/k4neo#12 ·
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TRON-Bioinformatics/k4neo#11 ·
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Difficulty 3/5 1-2 days Newbie friendliness 45/100
TRON-Bioinformatics/k4neo#10 ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
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Difficulty 2/5 1-3 hours Newbie friendliness 72/100
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docs: update README Open
Difficulty 2/5 1-3 hours Newbie friendliness 35/100
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Difficulty 2/5 1-3 hours Newbie friendliness 55/100
TRON-Bioinformatics/oblx#223 ·
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
TRON-Bioinformatics/oblx#222 ·
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
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Difficulty 2/5 1-3 hours Newbie friendliness 72/100
TRON-Bioinformatics/oblx#217 ·
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
TRON-Bioinformatics/oblx#198 · 1 comment ·
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
TRON-Bioinformatics/oblx#184 ·