Smithsonian/MitoPilot

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An R package for mitogenome assembly and annotation from genome skimming data that uses Nexflow and includes (Shiny) web app for project management and final curation of results

Stars: 6
Forks: 1
Open beginner issues: 0
Indexed issues: 4
Avg merge: 2d 6h
Merged PRs (30d): 3

Dominant language: R
License: GPL-3.0
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

Open All

4 open issues indexed

add handling of psuedogenes Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 48/100

Smithsonian/MitoPilot#89 · Opened Jun 30, 2026
Export individual sample FASTAs and feature tables Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Smithsonian/MitoPilot#54 · Opened Dec 15, 2025
Customize threshold for alignments displayed in Annotate module Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Smithsonian/MitoPilot#6 · 1 comment · Opened Dec 16, 2024
delete items from dropdown menus Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

Smithsonian/MitoPilot#5 · Opened Dec 16, 2024

Smithsonian/MitoPilot

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