RosettaCommons / RosettaCommons/rosetta
How to incorporate the information of base pairing probability into FARFAR2
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- Dominant language
- C++
- Stars
- 470
- Forks
- 169
- Avg merge
- 16d 23h
- Merged PRs (30d)
- 2
Description
Thank you for maintaining and continuously improving this incredible tool. I truly appreciate all the hard work that goes into making Rosetta so versatile and powerful.
I have a question regarding the use of base-pair probability matrices in the farfar2 fragment assembly protocol. I am interested in incorporating such information into the assembly process. Could you guide me on how this could be achieved, or point me to relevant resources or examples?
Thank you very much for your time and support. I look forward to any advice you can provide.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the FARFAR2 fragment assembly protocol and the issue's references to base-pair probability matrices. The scope is not defined: determine whether existing Rosetta functionality or documentation explains this integration, and clarify what implementation or guidance would count as done.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- cpp
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100