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ReproNim

9 indexed repositories · View on GitHub

neurodocker
Generate custom Docker and Singularity images, and minimize existing containers

Python · 361 stars
containers
Containers "distribution" for reproducible neuroimaging

Python · 32 stars
reproman
ReproMan (AKA NICEMAN, AKA ReproNim TRD3)

Python · 24 stars
reprostim
Automated capture of audio-visual stimuli into BIDS datasets

Python · 8 stars
ReproInventory
A repo for developing the ReproNim inventory of training resources.

TypeScript · 6 stars
OpenNeuroDerivatives-NIDM

Dockerfile · 1 star
simple2_bidsapp_babs
test freesurfer_bidsapp with babs

Shell · 1 star
freesurfer-nidm_bidsapp
A BIDS App implementation for FreeSurfer that provides standardized surface reconstruction and morphometric analysis with NIDM output.

Python · 0 stars
repronim.org
website for repronim.org: A Center for Reproducible Neuroimaging Computation

HTML · 0 stars

Beginner friendly Everything

Open All

tune _parse_scan_metadata to prefer 'duration' field from _scans.tsv when present Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/reprostim#281 · Opened Sep 18, 2026
Add "bindpaths" configuration Open

ReproNim/containers#171 · 1 assignee · Opened Sep 14, 2026
download_url gives no retry and a confusing, redundantly-nested error on large-file IncompleteRead/connection-reset failures Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

ReproNim/containers#169 · Opened Sep 14, 2026
No BABS derivative has dataset_description.json at its root Open

Difficulty 4/5 3-5 days Newbie friendliness 58/100

ReproNim/simple2_bidsapp_babs#12 · 1 comment · Opened Aug 28, 2026
BEP028 support! Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/reprostim#277 · Opened Aug 26, 2026
bids-qr-inject to add mode to inject QR codes into BIDS Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

ReproNim/reprostim#275 · Opened Aug 26, 2026
CI: singularity build hangs on GH-hosted runners (unprivileged user namespace restriction) Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

ReproNim/freesurfer-nidm_bidsapp#12 · Opened Aug 26, 2026
Neurodocker site error Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

ReproNim/repronim.org#489 · Opened Aug 6, 2026
Update Collaborator page with new collaboration projects for Phase 3 Open

Difficulty 2/5 1-3 hours Newbie friendliness 42/100

ReproNim/repronim.org#488 · Opened Aug 4, 2026
Hard-coded apt dependencies in templates break on Debian Bullseye+ Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

ReproNim/neurodocker#728 · Opened Aug 4, 2026
as of 1.11.0.423 might still be trying to kill whenever not starting the code/reprostim-timesync-stimuli Open

ReproNim/reprostim#269 · 1 assignee · Opened Jul 31, 2026
Prepare ReproStim Webinar Open

ReproNim/reprostim#265 · 2 assignees · Opened Jul 22, 2026
Update DMSP NIH documents Open

ReproNim/repronim.org#481 · 3 comments · 2 assignees · Opened Jul 22, 2026
Test/integrate(?) with "encoding-helper" Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/reprostim#261 · Opened Jul 17, 2026
NIDM extraction: 51/219 datasets failed in the 2025-05-16 run Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

ReproNim/OpenNeuroDerivatives-NIDM#7 · Opened Jul 14, 2026
More resources, from me to you! Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/ReproInventory#44 · Opened Jun 11, 2026
Consider adding "Infrastructure" Open

Difficulty 2/5 1-3 hours Newbie friendliness 50/100

ReproNim/repronim.org#477 · Opened Jun 2, 2026
Give "Additional asscociated tools" its own page Open

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

ReproNim/repronim.org#476 · Opened Jun 2, 2026
Add sample ReproNIm acknowledgement statement for authors/collaborators somewhere Open

Difficulty 2/5 1-3 hours Newbie friendliness 65/100

ReproNim/repronim.org#474 · Opened Jun 1, 2026
Incorporate STAMPED into ReproNim principles Open

ReproNim/repronim.org#472 · 1 assignee · Opened May 28, 2026
Add bats smoke tests for wrapper-script argument parsing Open

Difficulty 2/5 1-3 hours Newbie friendliness 85/100

ReproNim/simple2_bidsapp_babs#7 · Opened May 14, 2026
Update reproiner from bookworm to trixie Open

blocked

Difficulty 5/5 Over a week Newbie friendliness 32/100

ReproNim/reprostim#247 · 1 comment · Opened May 5, 2026
Check/fixup/extend support for building from other docker registries Open

ReproNim/containers#160 · 1 reaction · 2 assignees · Opened Apr 23, 2026
Add material: test course Open

new-material

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

ReproNim/ReproInventory#37 · Opened Apr 23, 2026
Possible Questions for FAQ sheet - Open

needs-discussion

Difficulty 3/5 1-2 days Newbie friendliness 42/100

ReproNim/repronim.org#466 · 2 comments · Opened Apr 14, 2026
Adjust code/reprostim-videocapture-cron to use container Open

ReproNim/reprostim#237 · 2 comments · 1 assignee · Opened Mar 25, 2026
Links to other Reproducibility Initiatives Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/repronim.org#457 · 6 comments · Opened Mar 3, 2026
Add the ReproNim chatbot Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/repronim.org#456 · Opened Mar 3, 2026
Accept or Reject updates re: Claude ? Open

needs-discussion

Difficulty 5/5 Over a week Newbie friendliness 15/100

ReproNim/repronim.org#455 · 14 comments · Opened Mar 2, 2026
DataLad page inaccurate Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

ReproNim/repronim.org#453 · Opened Feb 23, 2026
Update licenses info in source files to be up to date Open

ReproNim/reprostim#226 · 8 comments · 1 assignee · Opened Feb 23, 2026
reprostim-screencapture experiences and desired options Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/reprostim#221 · Opened Jan 14, 2026
Consider adding page: How to mitigate risks of using AI Open

needs-discussion

Difficulty 4/5 3-5 days Newbie friendliness 30/100

ReproNim/repronim.org#448 · Opened Jan 8, 2026
Updating readme Open

ReproNim/simple2_bidsapp_babs#2 · 1 assignee · Opened Jan 8, 2026
slow download through git-annex from datasets.datalad.org Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

ReproNim/containers#155 · Opened Dec 30, 2025
Add publication for NiPoppy Open

ReproNim/repronim.org#442 · 1 assignee · Opened Dec 19, 2025
Webinar page refinement Open

needs-discussion

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/repronim.org#439 · Opened Dec 9, 2025
Consider addition of Geographic map for Fellows Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/repronim.org#435 · Opened Dec 2, 2025
Restructure documentation following Diátaxis Open

documentation

ReproNim/reprostim#206 · 1 assignee · Opened Nov 26, 2025
Establish linkml model for the inventory and establish "full ecosystem of CP7 Metadata tools" Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/ReproInventory#18 · Opened Nov 6, 2025
Failing to record when a new (HDMI) capturer is connected Open

ReproNim/reprostim#201 · 1 assignee · Opened Nov 4, 2025
Text on tutorials page Open

ReproNim/repronim.org#425 · 1 comment · 1 assignee · Opened Oct 21, 2025
Add NITRC connection Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

ReproNim/ReproInventory#17 · Opened Oct 15, 2025
Setup monitoring for reprostim-timesync-stimuli not being ran Open

ReproNim/reprostim#194 · 1 assignee · Opened Oct 13, 2025
Fellows Products Open

pending content

ReproNim/repronim.org#414 · 2 comments · 1 assignee · Opened Oct 7, 2025
Add PR reviewer checklist somewhere Open

ReproNim/repronim.org#413 · 1 comment · 1 assignee · Opened Oct 7, 2025
Update tutorial links on NIDM with the tutorials on annotating Freesurfer and FSL Open

ReproNim/repronim.org#407 · 1 assignee · Opened Sep 30, 2025
Neurodocker tutorial enhancement Open

ReproNim/repronim.org#399 · 1 comment · 1 reaction · 1 assignee · Opened Sep 12, 2025
Anti-pattern global state mutation with reproman.cfg Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/reproman#639 · Opened Sep 11, 2025
Remove setup_requires to avoid deprecation warning on RTD builds (could break October 25) Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

ReproNim/reproman#638 · 2 comments · Opened Sep 11, 2025

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