frank by group is much slower than rank

Open
#3,988 3 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
35/100
Issue type
Bug
Clarity
Mostly clear
Activity status
Stale
Tech stack
r
Domain
performance

Research direction

Start with the supplied grouped frank benchmark and compare it with rank(unclass(val), ties.method = "first") using the example data. Trace the frank entry point and grouped execution path, then verify that the completed change improves performance for many groups without changing ranking results.

Written by the indexing model from the issue text.

Description

GForce

I have asked a question at Stackoverflow to speed up a simple code involving calculating the ranks of dates by groups.

library(data.table)
library(lubridate)
library(microbenchmark)
set.seed(1)
NN <- 1000000
EE <- 10   
# Just an example.
todo <- data.table(id=paste0("ID",rep(1:NN, each=EE)), 
          val=dmy("1/1/1980") + sample(1:14000,NN*EE,replace=T))
# I want to benchmark this:
todo[,ord := frank(val, ties.method="first"), by=id]  

https://stackoverflow.com/questions/58503115/how-to-compute-the-ranking-of-dates-by-groups-faster-with-data-table-and-lubri/58505724#58505724

and someone (sindri_baldur) has posted a simple alternative using rank(unclass(...)) that is almost 10 times faster.

todo[, rank(unclass(val), ties.method = "first"), by = id]

At the end it seems the slowness is not due to the fact of being a date but that frank takes a long time when calculated on many groups.

I'm using R 3.5.3 Open on Windows 10. I don't know about the other guy.
data.table 1.12.3

Dominant language
R
Stars
3.9k
Forks
1.1k
Avg merge
14h 4m
Merged PRs (30d)
4

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

More from Rdatatable/data.table

All issues in Rdatatable/data.table

Similar issues

More R issues

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.