Project-MONAI/tutorials

View on GitHub

MONAI Tutorials

Stars: 2.5k
Forks: 803
Open beginner issues: 0
Indexed issues: 113
Avg merge: 6d 22h
Merged PRs (30d): 3

Dominant language: Jupyter Notebook
License: Apache-2.0
Last GitHub push: Sep 15, 2026
Latest indexed: Sep 19, 2026
Contributing guide: Contributing guide
Code of conduct: No code of conduct
Beginner labels: good first issue help wanted

Beginner friendly Everything

Open All

113 open issues indexed

Auto3DSeg evaluation using dice coefficient Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/tutorials#1742 · 1 comment · Opened Jun 27, 2024
The execution of `runner.sh` is timing out due to the large dataset Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/tutorials#1728 · 1 reaction · Opened Jun 13, 2024
the argument needed to change the default directory in pathology/tumor_detection/README.MD Open

Difficulty 1/5 Under an hour Newbie friendliness 85/100

Project-MONAI/tutorials#1704 · Opened Apr 30, 2024
Kernel hangs in "TCIA_PROSTATEx_Prostate_MRI_Anatomy_Model.ipynb" Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1694 · 11 comments · Opened Apr 17, 2024
RandCropByPosNegLabeld() can't support two labels Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/tutorials#1652 · Opened Feb 25, 2024
Auto3DSeg BundleGen clobbers existing bundles Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/tutorials#1630 · 1 reaction · Opened Feb 2, 2024
numpy.linalg.LinAlgError: Matrix is not positive definite Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1629 · 2 comments · Opened Feb 1, 2024
Cannot use decollate on torch tensors and if i want to stack meta tensors then i cant do so because i can't account for different metas in the meta tensor Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1620 · 1 comment · Opened Jan 19, 2024
can not edit the inference labels for the radilogy app Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/tutorials#1605 · 7 comments · Opened Jan 6, 2024
test error unet_segmentation_3d_ignite_clearml.ipynb Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/tutorials#1555 · Opened Oct 26, 2023
Auto3DSeg in Azure fails - new to Auto3DSeg Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

Project-MONAI/tutorials#1554 · 26 comments · Opened Oct 26, 2023
pathology/nuclick/nuclick_infer.ipynb Open

Project-MONAI/tutorials#1542 · 8 comments · 1 assignee · Opened Oct 5, 2023
module 'aim' has no attribute 'Run' Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/tutorials#1536 · 2 comments · Opened Sep 28, 2023
Auto3Dseg cuda OOM during Ensembling Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

Project-MONAI/tutorials#1505 · 14 comments · Opened Sep 4, 2023
Auto3Dseg crashs Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

Project-MONAI/tutorials#1498 · 3 comments · Opened Aug 30, 2023
AutoRunner fails on segresnet, out of memory Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1495 · 3 comments · Opened Aug 25, 2023
Fix (+suggestions) to instantiation of LocalNet in 3D registration tutorial Open

bug enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 50/100

Project-MONAI/tutorials#1482 · 1 comment · 3 reactions · Opened Aug 11, 2023
Simple non-deep learning bundle (eg. sklearn classifier)? Open

feature request help wanted

Difficulty 5/5 Over a week Newbie friendliness 20/100

Project-MONAI/tutorials#1454 · Opened Jul 14, 2023
Simple example of adapting non-Pytorch networks to bundles Open

feature request help wanted

Project-MONAI/tutorials#1453 · 1 assignee · Opened Jul 14, 2023
Simple example of adapting non-MONAI Pytorch code to bundles Open

feature request

Project-MONAI/tutorials#1452 · 1 comment · 1 assignee · Opened Jul 14, 2023
Add tutorial on memory management Open

feature request

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/tutorials#1435 · 2 reactions · Opened Jun 21, 2023
Dice Loss is Negative for some steps Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1434 · 1 comment · Opened Jun 21, 2023
Too large `step_size` in deepedit Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

Project-MONAI/tutorials#1430 · 3 comments · Opened Jun 19, 2023
a tutorial about how to modify algorithms and algorithm templates in auto3dseg Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

Project-MONAI/tutorials#1413 · 2 reactions · Opened Jun 6, 2023
tutorial about customized transform to handle torch tensor and metatensor Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/tutorials#1398 · Opened May 18, 2023
RetinaNet3D not serializing to torchscript Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1350 · Opened Apr 26, 2023
How to use image volumes with no boxes in the training dataset for RetinaNet 3D? Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/tutorials#1292 · 1 comment · Opened Apr 7, 2023
Data augmentation for Pancreas of MSD Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1271 · 1 comment · Opened Mar 27, 2023
Pretrained model not compatible with downstream training Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#1249 · 1 comment · Opened Mar 15, 2023
detection ensemble prediction Open

feature request

Difficulty 5/5 Over a week Newbie friendliness 25/100

Project-MONAI/tutorials#1238 · 3 comments · Opened Mar 2, 2023
endoscopy example doesn't work out of the box Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/tutorials#1237 · 1 comment · Opened Mar 1, 2023
Automatically stops while training on Auto3dSeg model Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/tutorials#1231 · 7 comments · Opened Feb 23, 2023
update to set `image_only` of LoadImage Open

feature request

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/tutorials#1199 · Opened Jan 30, 2023
Invalid Links in TorchIO_MONAI_PyTorch_Lightning notebook Open

Project-MONAI/tutorials#1184 · 2 comments · 1 assignee · Opened Jan 20, 2023
Errors in cross_validation_models_ensemble.ipynb Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/tutorials#1172 · 1 comment · Opened Jan 16, 2023
AutoRunner GPU usage Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

Project-MONAI/tutorials#1165 · 31 comments · Opened Jan 13, 2023
remove the workaround in TorchIO_MONAI_PyTorch_Lightning.ipynb Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/tutorials#1163 · Opened Jan 13, 2023
testing error modules/transform_visualization.ipynb Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

Project-MONAI/tutorials#1155 · 10 comments · Opened Jan 10, 2023
Adding a data loader script to read Brats challenge dataset from the drive or local machine Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

Project-MONAI/tutorials#1123 · Opened Dec 23, 2022
warning msgs `auto3dseg/notebooks/hpo_optuna.ipynb` Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

Project-MONAI/tutorials#1118 · 3 comments · Opened Dec 19, 2022
Supplement of the surgical tool challenge solution Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

Project-MONAI/tutorials#1093 · Opened Dec 6, 2022
Update 3d registration tutorial Open

Project-MONAI/tutorials#1056 · 1 comment · 1 assignee · Opened Nov 20, 2022
Detection tutorial failed to converge on another dataset Open

Project-MONAI/tutorials#1033 · 3 comments · 1 assignee · Opened Nov 11, 2022
rename the notebooks to have 'steps' Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

Project-MONAI/tutorials#996 · Opened Oct 18, 2022
creating a demo about debugging with monai bundle configparser Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

Project-MONAI/tutorials#914 · 1 comment · Opened Sep 9, 2022
new warning messages from notebooks Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

Project-MONAI/tutorials#910 · Opened Sep 9, 2022
using collection names with spaces in them breaks tcia_dataset.ipynb Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/tutorials#876 · 3 comments · Opened Aug 23, 2022
MONAI examples to imitate SynthSR and Synthseg in Freesurfer Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

Project-MONAI/tutorials#866 · 7 comments · 3 reactions · Opened Aug 15, 2022
some of the jupyternotebook tutorial requires scikit-learn Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

Project-MONAI/tutorials#832 · Opened Jul 27, 2022
update `tutorials/deployment/bentoml` Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

Project-MONAI/tutorials#794 · 1 reaction · Opened Jul 15, 2022

Project-MONAI/tutorials

Get new issues in your inbox