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OrcaBus

28 indexed repositories · View on GitHub

service-filemanager
The filemanager tracks object state in S3

Rust · 2 stars
orca-ui

TypeScript · 1 star
service-sash-regression
Compare sash

Python · 0 stars
service-shared-resources

TypeScript · 0 stars
service-workflow-manager
Workflow Manager Stack

Python · 0 stars
service-sequence-run-manager
Sequence Run Manager Stack

Python · 0 stars
orca-ui-v2
Temporary Repo for Orcabus LIMS Web UI v2

TypeScript · 0 stars
service-deploy-status-manager
Provides realtime information for each microservice's CloudFormation deployment in dev/stg/prod envs

TypeScript · 0 stars
service-fastq-sync-manager
Holds Step functions tasks until fastq requirements are met

TypeScript · 0 stars
service-icav2-wes-manager
Run analyses through ICAv2-backed WES interface

Python · 0 stars
service-icav2-data-copy-manager
Service for copying data from one ICAv2 destination to another

Python · 0 stars
service-dragen-wgts-rna-pipeline-manager
Dragen RNA Pipeline Orchestration through ICAv2

Python · 0 stars
service-sash-pipeline-manager
Run Sash through Nextflow on ICAv2

Python · 0 stars
service-oncoanalyser-wgts-both-pipeline-manager
Run the oncoanalyser-wgts-both pipeline from Oncoanalyser DNA + RNA inputs

Python · 0 stars
service-arriba-wgts-rna-pipeline-manager
Arriba WGTS RNA Pipeline Orchestration Service

Python · 0 stars
service-bssh-to-aws-s3-copy-manager
Copy primary data from our BSSH Project to our AWS S3 Pipeline Cache Bucket

TypeScript · 0 stars
service-rnasum-pipeline-manager
Run RNASum via the OrcaBus

Python · 0 stars
service-metadata-manager

Python · 0 stars
service-case-manager

Python · 0 stars
service-dragen-wgts-dna-pipeline-manager
The dragen wgts dna pipeline manager

Python · 0 stars
8 more repositories live on View on GitHub

Beginner friendly Everything

Open All

Pull metadata from Athena instead of API Open

enhancement

OrcaBus/service-data-sharing-manager#125 · 1 assignee · Opened Sep 16, 2026
Support caseId in top-level payload construct Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

OrcaBus/service-workflow-manager#181 · Opened Sep 10, 2026
Feat: Proper Case-WFR Linking Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

OrcaBus/service-case-manager#46 · Opened Sep 9, 2026
Security: pnpm audit vulnerabilities (2026-09-09) Open

dependencies security

Difficulty 1/5 Under an hour Newbie friendliness 10/100

OrcaBus/service-icav2-data-copy-manager#73 · Opened Sep 9, 2026
Security: pnpm audit vulnerabilities (2026-09-09) Open

dependencies security

Difficulty 1/5 Under an hour Newbie friendliness 10/100

OrcaBus/service-icav2-wes-manager#107 · Opened Sep 9, 2026
Security: pnpm audit vulnerabilities (2026-09-09) Open

dependencies security

Difficulty 1/5 Under an hour Newbie friendliness 20/100

OrcaBus/service-fastq-sync-manager#56 · Opened Sep 9, 2026
Security: pnpm audit vulnerabilities (2026-09-09) Open

dependencies security

Difficulty 1/5 Under an hour Newbie friendliness 25/100

OrcaBus/service-deploy-status-manager#11 · Opened Sep 9, 2026
Feat: Store Workflow Entity from Workflow Manager Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

OrcaBus/service-case-manager#43 · Opened Sep 7, 2026
Switch over to new CCGCM cognito and deal with that change Open

OrcaBus/orca-ui#299 · 1 assignee · Opened Sep 5, 2026
Security: pnpm audit vulnerabilities (2026-09-04) Open

dependencies security

Difficulty 1/5 Under an hour Newbie friendliness 20/100

OrcaBus/service-arriba-wgts-rna-pipeline-manager#50 · Opened Sep 4, 2026
Security: pnpm audit vulnerabilities (2026-09-02) Open

dependencies security

Difficulty 1/5 Under an hour Newbie friendliness 15/100

OrcaBus/service-icav2-data-copy-manager#71 · Opened Sep 2, 2026
Creator auditing and JWT authorization for custom sequence-run states Open

enhancement

OrcaBus/service-sequence-run-manager#71 · 1 assignee · Opened Sep 1, 2026
Separate Sequence Run Custom State API into Dedicated Endpoints Open

enhancement

OrcaBus/service-sequence-run-manager#69 · 1 assignee · Opened Sep 1, 2026
Track deployment actor and manual-approval identity via CloudTrail Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

OrcaBus/service-deploy-status-manager#6 · Opened Aug 26, 2026
Migrate application stack to GitStack for deploy status tracking Open

Difficulty 3/5 1-2 days Newbie friendliness 76/100

OrcaBus/service-sash-regression#13 · Opened Aug 24, 2026
Migrate application stack to GitStack for deploy status tracking Open

Difficulty 1/5 Under an hour Newbie friendliness 92/100

OrcaBus/service-case-manager#38 · Opened Aug 24, 2026
Generate infrastructure harmonisation Open

enhancement

OrcaBus/service-sash-regression#12 · 1 assignee · Opened Aug 24, 2026
Handover discussion Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

OrcaBus/service-sash-regression#11 · Opened Aug 24, 2026
Consider collectinsertsizemetrics for insert-size calculations Open

enhancement

OrcaBus/service-fastq-manager#67 · 1 assignee · Opened Aug 18, 2026
Use remaining_fraction to calculate sequali duplication stats Open

enhancement

OrcaBus/service-fastq-manager#66 · 1 assignee · Opened Aug 18, 2026
Cannot resolve a workflow run Open

OrcaBus/orca-ui#293 · 3 comments · 1 assignee · Opened Aug 17, 2026
Generate auto-deletion of bam files Open

enhancement

OrcaBus/service-analysis-glue#76 · 1 assignee · Opened Aug 17, 2026
Retrieving data for oncoanalyser paper Open

OrcaBus/service-data-sharing-manager#111 · 1 comment · 1 assignee · Opened Aug 17, 2026
Generate auto-deletion of failed workflows Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

OrcaBus/service-analysis-glue#75 · Opened Aug 14, 2026
Enhance `GET /api/v1/deployStatus/listStacks` response and add free-text search support Open

enhancement

OrcaBus/service-deploy-status-manager#5 · 3 comments · 1 assignee · Opened Aug 6, 2026
Create a shared JWT encryption / rotation construct Open

enhancement

OrcaBus/service-shared-resources#25 · 1 assignee · Opened Aug 5, 2026
Create a secondary 'sync' bus Open

enhancement

OrcaBus/service-shared-resources#24 · 4 comments · 1 assignee · Opened Jul 15, 2026
Simplify data copy with object tagging supported Open

enhancement

OrcaBus/service-icav2-data-copy-manager#64 · 1 assignee · Opened Jul 9, 2026
Feat: Workflow/Analysis Run Dispatcher Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

OrcaBus/service-case-manager#28 · Opened Jun 23, 2026
Make OrcaBusApiGateway CORS config extensible Open

enhancement

OrcaBus/platform-cdk-constructs#246 · 1 assignee · Opened Jun 10, 2026
Feat: Expand Case Manager Field Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

OrcaBus/service-case-manager#26 · Opened Jun 10, 2026
UI V2 Pipeline Deployment Open

feature

OrcaBus/orca-ui#280 · 1 comment · 1 assignee · Opened Jun 10, 2026
Should we make `libraries` mandatory in WRSC and WRU events? Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

OrcaBus/service-workflow-manager#168 · 1 comment · Opened Jun 5, 2026
Consistent URL patterns and routing conventions for the UI Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

OrcaBus/orca-ui-v2#27 · 1 comment · Opened Jun 3, 2026
Add archive request action for sequencing runs Open

OrcaBus/service-sequence-run-manager#56 · 6 comments · 1 assignee · Opened Jun 3, 2026
Discussion: Archive Analysis with OrcaUI button Open

feature

OrcaBus/orca-ui#279 · 4 comments · 1 assignee · Opened Jun 3, 2026
Provide 'archive sequencing' button Open

feature

OrcaBus/orca-ui#278 · 2 comments · 1 assignee · Opened Jun 3, 2026
Add in somalier sync Open

enhancement

OrcaBus/service-fastq-sync-manager#45 · 1 assignee · Opened Jun 2, 2026
Auto archive analyses Open

enhancement

OrcaBus/service-analysis-glue#71 · 5 comments · 1 assignee · Opened May 24, 2026
Automate fastq archival processes Open

OrcaBus/service-fastq-glue#42 · 9 comments · 1 assignee · Opened May 24, 2026
Add events for Analsis entities Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

OrcaBus/service-workflow-manager#165 · Opened May 21, 2026
Add events for Workflow entities Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

OrcaBus/service-workflow-manager#164 · Opened May 21, 2026
Suggestion: Add description attribute to workflow object Open

Difficulty 3/5 1-2 days Newbie friendliness 55/100

OrcaBus/service-workflow-manager#161 · Opened May 4, 2026
Feature: Auto-abort workflows after one day Open

enhancement

OrcaBus/service-icav2-wes-manager#71 · 1 assignee · Opened Apr 24, 2026
API timeouts of workflow run manager api Open

OrcaBus/service-workflow-manager#158 · 1 comment · 1 assignee · Opened Apr 23, 2026
Catch somalier failures Open

OrcaBus/service-fastq-manager#41 · 1 comment · 1 assignee · Opened Mar 26, 2026
Add Case State management Open

enhancement epic

OrcaBus/service-case-manager#15 · 1 comment · 1 assignee · Opened Mar 25, 2026
Support batch workflow run state transition Open

feature

OrcaBus/orca-ui#255 · 1 comment · 1 assignee · Opened Mar 25, 2026
Cannot filter by status on `/api/v1/workflowrun` endpoint Open

change request

OrcaBus/service-workflow-manager#147 · 3 comments · 1 assignee · Opened Mar 23, 2026
Feature Request: Adding log level to comment type Open

discussion

Difficulty 5/5 Over a week Newbie friendliness 25/100

OrcaBus/service-workflow-manager#144 · 1 comment · Opened Mar 12, 2026

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