OpenCloning / OpenCloning/OpenCloning_backend

Better handling of uracils

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#80 1 comment 0 reactions 0 assignees View on GitHub

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Dominant language
Python
Stars
8
Forks
11
Avg merge
14m
Merged PRs (30d)
5

Description

As of now, they will not be included in the match. This is so that they are conserved in the final sequence. With the alternative joining proposed in #69 this could be fixed.

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reading this issue alongside the alternative joining proposed in #69, since no source file or test is named here. Determine how uracils are currently excluded from matches and define done as handling them without losing them from the final sequence.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
backend, bioinformatics
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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