Owner

Merck

34 indexed repositories · View on GitHub

• BioPhi

  BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio...

  Python · 265 stars

• deepbgc

  BGC Detection and Classification Using Deep Learning

  Jupyter Notebook · 161 stars

• Halyard

  Halyard is an extremely horizontally scalable Triplestore with support for Named Graphs, designed for integration of extremely large Sema...

  Java · 114 stars

• r2rtf

  Easily Create Production-Ready Rich Text Format (RTF) Table and Figure

  R · 85 stars

• Sapiens

  Sapiens is a human antibody language model based on BERT.

  Jupyter Notebook · 80 stars

• matcher

  Matcher is a tool for understanding how chemical structure optimization problems have been solved. Matcher enables deep control over sear...

  Python · 71 stars

• DeepNeuralNet-QSAR

  Python · 66 stars

• rdf2x

  RDF2X converts big RDF datasets to the relational database model, CSV, JSON and ElasticSearch.

  Java · 57 stars

• Line-of-Therapy-Algorithm

  This is the Line of Therapy Algorithm, as described in the paper "Temporal phenotyping by mining healthcare data to derive lines of thera...

  Python · 39 stars

• simtrial

  Clinical trial simulation for time-to-event endpoints

  R · 39 stars

• PepSeA

  Python · 35 stars

• gsDesign2

  Group Sequential Design Under Non-Proportional Hazards

  R · 34 stars

• pkglite

  Compact Package Representations

  R · 31 stars

• metalite.ae

  An R package for standard adverse events analysis

  R · 27 stars

• sonar-r-plugin

  Adds support for R language into SonarQube. It uses output from lintr tool which is processed by the plugin and uploaded into SonarQube s...

  Java · 26 stars

• forestly

  Interactive forest plot for adverse events analysis

  R · 22 stars

• metalite

  An R package to create metadata structure for ADaM data analysis and reporting

  R · 18 stars

• pmpo

  Probabilistic Multi-Parameter Optimization (pMPO)

  Python · 17 stars

• mRNAid

  Jupyter Notebook · 17 stars

• AbLEF

  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction

  Python · 14 stars

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