Owner

MagneticResonanceImaging

10 indexed repositories · View on GitHub

MRIReco.jl
Julia Package for MRI Reconstruction

Julia · 97 stars
BlochSim.jl
An implementation of the Bloch-McConnell equations for simulating MR spin dynamics.

Julia · 32 stars
MRIFieldmaps.jl
Julia methods for estimating fieldmaps in MRI

Julia · 13 stars
BartIO.jl

Julia · 12 stars
MRITwixTools.jl

Julia · 4 stars
EPGsim.jl
Implementation of Extended Phase Graph simulation for MRI compatible with Automatic Differentiation

Julia · 2 stars
MRIPulses.jl
Tools for designing RF pulses in MRI

Julia · 2 stars
MRIRecoBenchmarks
Benchmarks for MRI Reconstruction Frameworks

Julia · 1 star
QMRIColors.jl

Julia · 1 star
PERK.jl
PERK: Parameter Estimation via Regression with Kernels

Julia · 0 stars

Beginner friendly Everything

Open All

Register v0.2.1 Open

Difficulty 1/5 Under an hour Newbie friendliness 70/100

MagneticResonanceImaging/EPGsim.jl#7 · 3 comments · Opened Jun 21, 2026
Interface between twix and AcquisitionData or RawAcquisitionData Open

enhancement

Difficulty 4/5 3-5 days Newbie friendliness 42/100

MagneticResonanceImaging/MRITwixTools.jl#2 · Opened Jun 19, 2026
autodiff vs hand diff for (I-A)⁻¹ Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

MagneticResonanceImaging/BlochSim.jl#73 · 1 comment · Opened Jun 13, 2026
Make Spin mutable to avoid allocations? Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

MagneticResonanceImaging/BlochSim.jl#69 · 2 comments · Opened Jun 1, 2026
Feature: generalize bSSFP to DESS, TESS, MESS Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/BlochSim.jl#67 · Opened May 28, 2026
Feature request: SLfRank Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/MRIPulses.jl#1 · 1 comment · Opened May 25, 2026
Issue with raw.params["trajectory"] = "other" for central TSE sequence simulated with KomaMRI Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MagneticResonanceImaging/MRIReco.jl#288 · Opened May 20, 2026
Untested lines in mese.jl Open

Difficulty 2/5 1-3 hours Newbie friendliness 78/100

MagneticResonanceImaging/BlochSim.jl#53 · Opened Apr 19, 2026
Type inference impossible in BlochMcConnellMatrix Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MagneticResonanceImaging/BlochSim.jl#48 · Opened Feb 2, 2026
Boundary check of the trajectory for nufft Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 48/100

MagneticResonanceImaging/MRIReco.jl#270 · Opened Jan 21, 2026
imports issues Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

MagneticResonanceImaging/PERK.jl#27 · Opened Dec 28, 2025
Multiple regularizers Open

enhancement good first issue

MagneticResonanceImaging/MRIReco.jl#263 · 4 comments · 1 assignee · Opened Oct 16, 2025
Consider using ExponentialAction.jl or ExponentialUtilities.jl Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/BlochSim.jl#43 · 1 comment · Opened Oct 8, 2025
bump v0.3.2 Open

Difficulty 2/5 Under an hour Newbie friendliness 25/100

MagneticResonanceImaging/BartIO.jl#20 · 1 comment · Opened Sep 24, 2025
Add contributor guide to documentation Open

MagneticResonanceImaging/MRIReco.jl#256 · 1 assignee · Opened Aug 1, 2025
Add GPU reconstruction example to documentation Open

documentation good first issue

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MagneticResonanceImaging/MRIReco.jl#255 · 3 comments · Opened Aug 1, 2025
Profiles with noise and dummy scans should be excluded while converting to AcquisitionData Open

bug

MagneticResonanceImaging/MRIReco.jl#248 · 1 comment · 1 assignee · Opened Jun 24, 2025
Crosslink the python code Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MagneticResonanceImaging/QMRIColors.jl#12 · Opened Jun 23, 2025
FIRE support Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#247 · 4 comments · Opened Apr 22, 2025
Major enhancement : handles all the MRD dimension (AVG, SLC, ECO, PHS, REP, SEG, SET) Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

MagneticResonanceImaging/MRIReco.jl#246 · Opened Apr 17, 2025
JLArray related test are failling in MRIOperators Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#243 · Opened Apr 15, 2025
Add the package to mrhub Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 38/100

MagneticResonanceImaging/QMRIColors.jl#11 · 4 comments · Opened Apr 7, 2025
Failed to load bruker datasets with partia foutier along the first dimension Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 38/100

MagneticResonanceImaging/MRIReco.jl#241 · Opened Apr 4, 2025
Partial Fourier issue with MRD datasets Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 35/100

MagneticResonanceImaging/MRIReco.jl#240 · 4 comments · Opened Feb 26, 2025
How to handle the reconstructed FOV when remove_oversampling is used. Open

bug enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#239 · 1 comment · Opened Feb 26, 2025
default flags for remove_raw_by_flags should not remove ACQ_IS_PARALLEL_CALIBRATION Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MagneticResonanceImaging/MRIReco.jl#237 · 1 comment · Opened Feb 20, 2025
Fully sampled direct reconstruction does not handle specific acquisition ordering Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MagneticResonanceImaging/MRIReco.jl#235 · 1 comment · Opened Feb 19, 2025
Export FFTW when importing MRIReco Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

MagneticResonanceImaging/MRIReco.jl#234 · Opened Feb 19, 2025
CustomExample.jl does not work as expected Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 20/100

MagneticResonanceImaging/MRIReco.jl#233 · Opened Feb 19, 2025
Processing functions on RawAcquisitionData Open

enhancement

MagneticResonanceImaging/MRIReco.jl#231 · 2 comments · 1 assignee · Opened Feb 17, 2025
Apply Coil Compression on a subset of the kdata for efficiency Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#229 · Opened Feb 14, 2025
Reworked Jcampdx : simplification and remove try-catch Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#219 · Opened Dec 20, 2024
kDataCart should be reworked in order to get a >= 7 dim array (kx,ky,kz,cha,echo,sl,rep) Open

enhancement

MagneticResonanceImaging/MRIReco.jl#217 · 1 assignee · Opened Dec 20, 2024
Fix and enhanced documentation Open

documentation good first issue

Difficulty 5/5 Over a week Newbie friendliness 20/100

MagneticResonanceImaging/MRIReco.jl#211 · 7 comments · Opened Dec 11, 2024
CI error for 3D CS reconstruction Open

Difficulty 3/5 1-2 days Newbie friendliness 20/100

MagneticResonanceImaging/MRIReco.jl#204 · 3 comments · Opened Nov 26, 2024
MRIReco load time Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

MagneticResonanceImaging/MRIReco.jl#199 · 12 comments · Opened Aug 12, 2024
Add RFF doc example Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MagneticResonanceImaging/PERK.jl#18 · Opened Jul 10, 2024
All API version docs seem broken by API change? Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

MagneticResonanceImaging/MRIReco.jl#188 · 1 reaction · Opened May 28, 2024
Aqua tests fail Open

good first issue

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MagneticResonanceImaging/BlochSim.jl#38 · Opened May 21, 2024
Revisit v11 tests Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

MagneticResonanceImaging/PERK.jl#17 · Opened Apr 14, 2024
ProgressBar for iterative algorithm Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#177 · 3 comments · Opened Jan 17, 2024
GPU support Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/EPGsim.jl#5 · Opened Aug 29, 2023
`Echotime` requires `Tuple`s to be homogeneous Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

MagneticResonanceImaging/MRIFieldmaps.jl#14 · 1 comment · Opened Jan 5, 2023
move mergeChannels in MRIReco ? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

MagneticResonanceImaging/MRIReco.jl#136 · Opened Nov 24, 2022
Plans Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

MagneticResonanceImaging/MRIFieldmaps.jl#5 · Opened Nov 13, 2022
Implement Toeplitz optimization for FieldmapNFFTOp Open

enhancement

Difficulty 3/5 1-2 days Newbie friendliness 38/100

MagneticResonanceImaging/MRIReco.jl#124 · 1 reaction · Opened Oct 15, 2022
Issue with CompositeOp and isWeighting Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#123 · Opened Oct 15, 2022
Keeping results for major version Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

MagneticResonanceImaging/MRIRecoBenchmarks#7 · 2 comments · Opened Oct 11, 2022
Fista algorithm : accuracy problem Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

MagneticResonanceImaging/MRIReco.jl#114 · 30 comments · Opened Oct 5, 2022
Duplicate implementation of power iteration Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

MagneticResonanceImaging/MRIReco.jl#109 · 11 comments · Opened Sep 30, 2022

MagneticResonanceImaging

Get new issues in your inbox