SQLite import for mimic3 gives mixed column type warning

Prerequisites

• [X ] Put an X between the brackets on this line if you have done all of the following:
  • Checked the online documentation: https://mimic.mit.edu/
  • Checked that your issue isn't already addressed: https://github.com/MIT-LCP/mimic-code/issues?utf8=%E2%9C%93&q=

Description

While trying to import mimic3 into SQLite with import.py, I get the following error:

Starting processing DATETIMEEVENTS.csv.gz
mimic-code/mimic-iii/buildmimic/sqlite/import.py:25: DtypeWarning: Columns (13) have mixed types. Specify dtype option on import or set low_memory=False.
  for chunk in pd.read_csv(f, index_col="ROW_ID", chunksize=CHUNKSIZE):
...
Starting processing INPUTEVENTS_CV.csv.gz
/home/armando/projects/mimic-code/mimic-iii/buildmimic/sqlite/import.py:25: DtypeWarning: Columns (20,21) have mixed types. Specify dtype option on import or set low_memory=False.
  for chunk in pd.read_csv(f, index_col="ROW_ID", chunksize=CHUNKSIZE):
...
Starting processing NOTEEVENTS.csv.gz
/home/armando/projects/mimic-code/mimic-iii/buildmimic/sqlite/import.py:25: DtypeWarning: Columns (4,5) have mixed types. Specify dtype option on import or set low_memory=False.
  for chunk in pd.read_csv(f, index_col="ROW_ID", chunksize=CHUNKSIZE):
...
Starting processing CHARTEVENTS.csv.gz
/home/armando/projects/mimic-code/mimic-iii/buildmimic/sqlite/import.py:25: DtypeWarning: Columns (13) have mixed types. Specify dtype option on import or set low_memory=False.
  for chunk in pd.read_csv(f, index_col="ROW_ID", chunksize=CHUNKSIZE):
...

Inizia da mimic-iii/buildmimic/sqlite/import.py, alla chiamata pandas read_csv, e riproduci la DtypeWarning durante l’importazione dei file CSV indicati. Esamina le colonne segnalate e determina la gestione prevista per i relativi valori misti, quindi verifica che l’importazione SQLite venga completata senza questi avvisi.